Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28065 | 5' | -54.7 | NC_005887.1 | + | 12175 | 1.12 | 0.000447 |
Target: 5'- uGGAAGCUGCAGGCGUUCCGCGACUUCg -3' miRNA: 3'- -CCUUCGACGUCCGCAAGGCGCUGAAG- -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 29813 | 0.75 | 0.210207 |
Target: 5'- uGGAAGuCUGCGGGUGUg-CGCGGCg-- -3' miRNA: 3'- -CCUUC-GACGUCCGCAagGCGCUGaag -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 2237 | 0.74 | 0.247056 |
Target: 5'- ---cGCUGUAGGCGUcCUGCGGCUcgUCc -3' miRNA: 3'- ccuuCGACGUCCGCAaGGCGCUGA--AG- -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 18910 | 0.72 | 0.336554 |
Target: 5'- uGGAAGCggcgggaugGCGGGCGg-CUGCGACg-- -3' miRNA: 3'- -CCUUCGa--------CGUCCGCaaGGCGCUGaag -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 35060 | 0.71 | 0.37122 |
Target: 5'- aGGucGCUGCcgucgucGGCGgg-CGCGACUUCg -3' miRNA: 3'- -CCuuCGACGu------CCGCaagGCGCUGAAG- -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 30732 | 0.7 | 0.417853 |
Target: 5'- ---cGCUGCGuGGCc-UUCGCGACUUCg -3' miRNA: 3'- ccuuCGACGU-CCGcaAGGCGCUGAAG- -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 26960 | 0.69 | 0.457624 |
Target: 5'- aGAucCUGCAGGcCGUUCgGCGACg-- -3' miRNA: 3'- cCUucGACGUCC-GCAAGgCGCUGaag -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 1435 | 0.68 | 0.553678 |
Target: 5'- -cGAGCUGCuggaAGGCGUUCCG-GAUc-- -3' miRNA: 3'- ccUUCGACG----UCCGCAAGGCgCUGaag -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 15912 | 0.68 | 0.520815 |
Target: 5'- cGGAucucgcgcGGCUGCAGcgcGCGUUCCcgcGCGGCc-- -3' miRNA: 3'- -CCU--------UCGACGUC---CGCAAGG---CGCUGaag -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 36548 | 0.67 | 0.620937 |
Target: 5'- ---cGCgaauuccgGCAGGCGUUCgUGCGccuGCUUCg -3' miRNA: 3'- ccuuCGa-------CGUCCGCAAG-GCGC---UGAAG- -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 17652 | 0.67 | 0.609644 |
Target: 5'- uGAAGCUGCAGGgcaCGaUCCucgccgcgcuugGCGACgUCg -3' miRNA: 3'- cCUUCGACGUCC---GCaAGG------------CGCUGaAG- -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 13101 | 0.67 | 0.575928 |
Target: 5'- cGGAGuGCUGCAgGGCGUgCCGaagguCGACa-- -3' miRNA: 3'- -CCUU-CGACGU-CCGCAaGGC-----GCUGaag -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 34936 | 0.67 | 0.575928 |
Target: 5'- cGAGGCggcgGCGGGUGcgaCCGUGGCgaucgUCg -3' miRNA: 3'- cCUUCGa---CGUCCGCaa-GGCGCUGa----AG- -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 9070 | 0.66 | 0.675099 |
Target: 5'- uGGAAGUgcgccggcugcgGCGGGacgaaGUUUCGCGAgaUCa -3' miRNA: 3'- -CCUUCGa-----------CGUCCg----CAAGGCGCUgaAG- -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 11040 | 0.66 | 0.666106 |
Target: 5'- gGGAgaaccgGGC-GCAGGCGUggacacugauuUCCGCGccGCUgcUCa -3' miRNA: 3'- -CCU------UCGaCGUCCGCA-----------AGGCGC--UGA--AG- -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 14518 | 0.66 | 0.666106 |
Target: 5'- uGGuccGCuUGCAGGCGcggccgUCgGCGGCgcgUCg -3' miRNA: 3'- -CCuu-CG-ACGUCCGCa-----AGgCGCUGa--AG- -5' |
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28065 | 5' | -54.7 | NC_005887.1 | + | 7560 | 0.66 | 0.666106 |
Target: 5'- aGGAuccGGCcucgugGCAGGCGUaUCCGgaCGGCaUCg -3' miRNA: 3'- -CCU---UCGa-----CGUCCGCA-AGGC--GCUGaAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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