miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28066 5' -52.3 NC_005887.1 + 22863 0.66 0.785257
Target:  5'- -cGC-CGGCAUCGGGaucaGCAcUUGuuGACc -3'
miRNA:   3'- cuCGaGCCGUAGCCC----CGU-AACuuUUG- -5'
28066 5' -52.3 NC_005887.1 + 26002 0.66 0.783168
Target:  5'- cAGCUucacgggCGGCGUCgGGGGCGaggcuaccggggaUUGAAAGg -3'
miRNA:   3'- cUCGA-------GCCGUAG-CCCCGU-------------AACUUUUg -5'
28066 5' -52.3 NC_005887.1 + 30370 0.66 0.762987
Target:  5'- cGAGCUCGGUGUacCGcucGGCGUcgccgucUGAAAACu -3'
miRNA:   3'- -CUCGAGCCGUA--GCc--CCGUA-------ACUUUUG- -5'
28066 5' -52.3 NC_005887.1 + 29500 0.66 0.742267
Target:  5'- uAGC-CGGCGgccucgacggCGGGcGCGUUGuAGAACa -3'
miRNA:   3'- cUCGaGCCGUa---------GCCC-CGUAAC-UUUUG- -5'
28066 5' -52.3 NC_005887.1 + 31296 0.67 0.708676
Target:  5'- cGAGCUcgacCGGCAUCGGcGCAccggUGGucACg -3'
miRNA:   3'- -CUCGA----GCCGUAGCCcCGUa---ACUuuUG- -5'
28066 5' -52.3 NC_005887.1 + 41256 0.67 0.685842
Target:  5'- -uGCUCGGCGUCGGcaauGGCGccGucGACc -3'
miRNA:   3'- cuCGAGCCGUAGCC----CCGUaaCuuUUG- -5'
28066 5' -52.3 NC_005887.1 + 40670 0.68 0.627976
Target:  5'- -cGCUCGuGC-UCGGGGCgAUcgagcgcgaUGAAGACc -3'
miRNA:   3'- cuCGAGC-CGuAGCCCCG-UA---------ACUUUUG- -5'
28066 5' -52.3 NC_005887.1 + 7221 0.69 0.616367
Target:  5'- aGGCgcugUCGGCGUCGGGcGCAUcGAc--- -3'
miRNA:   3'- cUCG----AGCCGUAGCCC-CGUAaCUuuug -5'
28066 5' -52.3 NC_005887.1 + 22080 0.7 0.502775
Target:  5'- cAGCacggCGGcCGUCGGGGCccuucugUGGAAACu -3'
miRNA:   3'- cUCGa---GCC-GUAGCCCCGua-----ACUUUUG- -5'
28066 5' -52.3 NC_005887.1 + 11997 1.09 0.001151
Target:  5'- cGAGCUCGGCAUCGGGGCAUUGAAAACc -3'
miRNA:   3'- -CUCGAGCCGUAGCCCCGUAACUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.