Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28067 | 3' | -50.5 | NC_005887.1 | + | 1664 | 0.66 | 0.871191 |
Target: 5'- -uGCCAGC-CGUgCGcgcgcgccAGGUGCAGGAUGg -3' miRNA: 3'- acUGGUCGaGCA-GC--------UUCAUGUUCUGC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 1747 | 0.68 | 0.816848 |
Target: 5'- cGGCCAcacacGCUCGUCGAGGaaccGCGGGuuGu -3' miRNA: 3'- aCUGGU-----CGAGCAGCUUCa---UGUUCugC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 1947 | 0.71 | 0.607273 |
Target: 5'- cGACCGGCaCGUCGGccGUGCcGGGCa -3' miRNA: 3'- aCUGGUCGaGCAGCUu-CAUGuUCUGc -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 5591 | 0.73 | 0.52772 |
Target: 5'- -cGCCAGUUCGUCGAGGccaAGGGCu -3' miRNA: 3'- acUGGUCGAGCAGCUUCaugUUCUGc -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 5893 | 0.67 | 0.826503 |
Target: 5'- cGACCGGaaCGUCGAgcucGGUcGCcAGGCGa -3' miRNA: 3'- aCUGGUCgaGCAGCU----UCA-UGuUCUGC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 8744 | 0.66 | 0.902094 |
Target: 5'- aGACCAcgccgcGCUCG-CGcAGaaccUGCAAGACGu -3' miRNA: 3'- aCUGGU------CGAGCaGCuUC----AUGUUCUGC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 9458 | 0.66 | 0.879344 |
Target: 5'- cGACCAGgUgGUCacGGGUACGGuGGCGa -3' miRNA: 3'- aCUGGUCgAgCAGc-UUCAUGUU-CUGC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 11309 | 0.67 | 0.835933 |
Target: 5'- cGGCCGGCUCGgcagCGAGcgccGCAAccgcGACGg -3' miRNA: 3'- aCUGGUCGAGCa---GCUUca--UGUU----CUGC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 11658 | 0.68 | 0.816848 |
Target: 5'- cGcACCuGCUCGcCGA-GUACGAGGuCGa -3' miRNA: 3'- aC-UGGuCGAGCaGCUuCAUGUUCU-GC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 11786 | 1.09 | 0.002317 |
Target: 5'- aUGACCAGCUCGUCGAAGUACAAGACGc -3' miRNA: 3'- -ACUGGUCGAGCAGCUUCAUGUUCUGC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 12160 | 0.66 | 0.902094 |
Target: 5'- cUGGCCGGCgagaaGUgGAAGcUGCAGG-CGu -3' miRNA: 3'- -ACUGGUCGag---CAgCUUC-AUGUUCuGC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 12599 | 0.71 | 0.618811 |
Target: 5'- cGAUCAGCUCGcCGG---GCAAGACc -3' miRNA: 3'- aCUGGUCGAGCaGCUucaUGUUCUGc -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 13049 | 0.72 | 0.584278 |
Target: 5'- cGGCCAGCgUCGcCGc-GUACAAGGCc -3' miRNA: 3'- aCUGGUCG-AGCaGCuuCAUGUUCUGc -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 13241 | 0.73 | 0.53889 |
Target: 5'- cGAaacCCGGCUCGUCGcgaccgacGGUcACAAGGCGg -3' miRNA: 3'- aCU---GGUCGAGCAGCu-------UCA-UGUUCUGC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 13465 | 0.67 | 0.854074 |
Target: 5'- cUGACgGGCgcgcaggCGcUGAAGgACAAGACGg -3' miRNA: 3'- -ACUGgUCGa------GCaGCUUCaUGUUCUGC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 14195 | 0.68 | 0.776211 |
Target: 5'- cGACCAGUcggCGUgCGAGGUguuGCAGGuCGc -3' miRNA: 3'- aCUGGUCGa--GCA-GCUUCA---UGUUCuGC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 14691 | 0.66 | 0.887216 |
Target: 5'- cGAUCgGGCUCGUCGcGGcggGCGGGcCGg -3' miRNA: 3'- aCUGG-UCGAGCAGCuUCa--UGUUCuGC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 15143 | 0.66 | 0.886442 |
Target: 5'- cGACCGaccccaugcaggcGCUCGacggcauggCGAAGUACcuGGCGg -3' miRNA: 3'- aCUGGU-------------CGAGCa--------GCUUCAUGuuCUGC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 15632 | 0.67 | 0.845127 |
Target: 5'- cGGCCgGGCUCGcCGAu---CAGGGCGc -3' miRNA: 3'- aCUGG-UCGAGCaGCUucauGUUCUGC- -5' |
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28067 | 3' | -50.5 | NC_005887.1 | + | 15750 | 0.68 | 0.80698 |
Target: 5'- gGACCAGggCa-UGAAGUACAAGGCc -3' miRNA: 3'- aCUGGUCgaGcaGCUUCAUGUUCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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