miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28067 3' -50.5 NC_005887.1 + 15750 0.68 0.80698
Target:  5'- gGACCAGggCa-UGAAGUACAAGGCc -3'
miRNA:   3'- aCUGGUCgaGcaGCUUCAUGUUCUGc -5'
28067 3' -50.5 NC_005887.1 + 14195 0.68 0.776211
Target:  5'- cGACCAGUcggCGUgCGAGGUguuGCAGGuCGc -3'
miRNA:   3'- aCUGGUCGa--GCA-GCUUCA---UGUUCuGC- -5'
28067 3' -50.5 NC_005887.1 + 33544 0.69 0.765609
Target:  5'- -cGCCuGCUUcugGUCG-GGUGCGAGGCGa -3'
miRNA:   3'- acUGGuCGAG---CAGCuUCAUGUUCUGC- -5'
28067 3' -50.5 NC_005887.1 + 32012 0.69 0.721823
Target:  5'- aGGCCAGCcagaacguUCGaucUCGGAuGUGCGGGGCa -3'
miRNA:   3'- aCUGGUCG--------AGC---AGCUU-CAUGUUCUGc -5'
28067 3' -50.5 NC_005887.1 + 24288 0.69 0.721823
Target:  5'- cGAUCAGUUCcUCGAuccacgACGAGACGa -3'
miRNA:   3'- aCUGGUCGAGcAGCUuca---UGUUCUGC- -5'
28067 3' -50.5 NC_005887.1 + 26456 0.7 0.703821
Target:  5'- cGGCCAGCUgcgCGUCGAgcgcaccgagcugcuGGUGCGccugcugcgcgcGGGCGu -3'
miRNA:   3'- aCUGGUCGA---GCAGCU---------------UCAUGU------------UCUGC- -5'
28067 3' -50.5 NC_005887.1 + 17989 0.7 0.664978
Target:  5'- cGGCUcguGGUUCGUCGccG-ACGAGACGg -3'
miRNA:   3'- aCUGG---UCGAGCAGCuuCaUGUUCUGC- -5'
28067 3' -50.5 NC_005887.1 + 25250 0.71 0.653457
Target:  5'- gGAuucCCGGCgUCGUCGAGGUauuGCGAG-CGg -3'
miRNA:   3'- aCU---GGUCG-AGCAGCUUCA---UGUUCuGC- -5'
28067 3' -50.5 NC_005887.1 + 34469 0.71 0.618811
Target:  5'- cGGCCuGCUCGUCGG---ACGAGuCGg -3'
miRNA:   3'- aCUGGuCGAGCAGCUucaUGUUCuGC- -5'
28067 3' -50.5 NC_005887.1 + 12599 0.71 0.618811
Target:  5'- cGAUCAGCUCGcCGG---GCAAGACc -3'
miRNA:   3'- aCUGGUCGAGCaGCUucaUGUUCUGc -5'
28067 3' -50.5 NC_005887.1 + 1947 0.71 0.607273
Target:  5'- cGACCGGCaCGUCGGccGUGCcGGGCa -3'
miRNA:   3'- aCUGGUCGaGCAGCUu-CAUGuUCUGc -5'
28067 3' -50.5 NC_005887.1 + 18393 0.72 0.595759
Target:  5'- gGGCCgAGgUCGUCGGugcGUGCGcAGACGg -3'
miRNA:   3'- aCUGG-UCgAGCAGCUu--CAUGU-UCUGC- -5'
28067 3' -50.5 NC_005887.1 + 13049 0.72 0.584278
Target:  5'- cGGCCAGCgUCGcCGc-GUACAAGGCc -3'
miRNA:   3'- aCUGGUCG-AGCaGCuuCAUGUUCUGc -5'
28067 3' -50.5 NC_005887.1 + 19495 0.72 0.572842
Target:  5'- cGGCCGGCggcCGUCGAuGGUAcCGAGAUc -3'
miRNA:   3'- aCUGGUCGa--GCAGCU-UCAU-GUUCUGc -5'
28067 3' -50.5 NC_005887.1 + 13241 0.73 0.53889
Target:  5'- cGAaacCCGGCUCGUCGcgaccgacGGUcACAAGGCGg -3'
miRNA:   3'- aCU---GGUCGAGCAGCu-------UCA-UGUUCUGC- -5'
28067 3' -50.5 NC_005887.1 + 5591 0.73 0.52772
Target:  5'- -cGCCAGUUCGUCGAGGccaAGGGCu -3'
miRNA:   3'- acUGGUCGAGCAGCUUCaugUUCUGc -5'
28067 3' -50.5 NC_005887.1 + 18673 0.74 0.442066
Target:  5'- -cGCgCAGuCUCGUCGAAcGUGCAGGAUGc -3'
miRNA:   3'- acUG-GUC-GAGCAGCUU-CAUGUUCUGC- -5'
28067 3' -50.5 NC_005887.1 + 11786 1.09 0.002317
Target:  5'- aUGACCAGCUCGUCGAAGUACAAGACGc -3'
miRNA:   3'- -ACUGGUCGAGCAGCUUCAUGUUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.