miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28068 5' -60.6 NC_005887.1 + 17326 0.66 0.39006
Target:  5'- uGCGcuacCG-GCUGGCCGGcGGCCGcCGGc -3'
miRNA:   3'- cUGCa---GCuUGACCGGCU-CCGGC-GCCa -5'
28068 5' -60.6 NC_005887.1 + 14902 0.66 0.39006
Target:  5'- cGCGcUCGAACgugugGGCCGgcauGGGCCuCGGc -3'
miRNA:   3'- cUGC-AGCUUGa----CCGGC----UCCGGcGCCa -5'
28068 5' -60.6 NC_005887.1 + 32413 0.66 0.372606
Target:  5'- -uCGUCGAcgUGGCCGGcggcgauguGGCCgGCGGc -3'
miRNA:   3'- cuGCAGCUugACCGGCU---------CCGG-CGCCa -5'
28068 5' -60.6 NC_005887.1 + 32231 0.66 0.35903
Target:  5'- -uCGUCGuacgugcagccgaucAGCUGGCCGucGgCGCGGg -3'
miRNA:   3'- cuGCAGC---------------UUGACCGGCucCgGCGCCa -5'
28068 5' -60.6 NC_005887.1 + 40330 0.66 0.35569
Target:  5'- aGACGUucgccgccgaaaUGGACUGGCCGucgagcgcGGCCGUGc- -3'
miRNA:   3'- -CUGCA------------GCUUGACCGGCu-------CCGGCGCca -5'
28068 5' -60.6 NC_005887.1 + 27002 0.66 0.347437
Target:  5'- cACGUgGAACgUGGCCGAGucgaucCCGCGuGUc -3'
miRNA:   3'- cUGCAgCUUG-ACCGGCUCc-----GGCGC-CA- -5'
28068 5' -60.6 NC_005887.1 + 41449 0.67 0.339322
Target:  5'- cGACG-CGGAUcgaaGCCGAGGCCGCc-- -3'
miRNA:   3'- -CUGCaGCUUGac--CGGCUCCGGCGcca -5'
28068 5' -60.6 NC_005887.1 + 7474 0.67 0.339322
Target:  5'- aGCG-CGAACgacaaGGCgauCGAGGCCGCGa- -3'
miRNA:   3'- cUGCaGCUUGa----CCG---GCUCCGGCGCca -5'
28068 5' -60.6 NC_005887.1 + 13191 0.67 0.331346
Target:  5'- --gGUCGAGCaGGCCGccGGCCGaCGuGUg -3'
miRNA:   3'- cugCAGCUUGaCCGGCu-CCGGC-GC-CA- -5'
28068 5' -60.6 NC_005887.1 + 28143 0.67 0.30825
Target:  5'- cGGCGcCGccCUGuCCGAGGCCGCGc- -3'
miRNA:   3'- -CUGCaGCuuGACcGGCUCCGGCGCca -5'
28068 5' -60.6 NC_005887.1 + 26413 0.68 0.286403
Target:  5'- --gGUCGAGCUGGC---GGCCGCGcGg -3'
miRNA:   3'- cugCAGCUUGACCGgcuCCGGCGC-Ca -5'
28068 5' -60.6 NC_005887.1 + 35064 0.69 0.222391
Target:  5'- cGACGacccacagCGGGC-GGCCGGGGCCgaugucGCGGUc -3'
miRNA:   3'- -CUGCa-------GCUUGaCCGGCUCCGG------CGCCA- -5'
28068 5' -60.6 NC_005887.1 + 5730 0.7 0.216146
Target:  5'- cGACGUgguuccacgaggcCGGGauuccGGCCGAGGCCGCGa- -3'
miRNA:   3'- -CUGCA-------------GCUUga---CCGGCUCCGGCGCca -5'
28068 5' -60.6 NC_005887.1 + 277 0.7 0.211148
Target:  5'- aGACGUggcgcggGAACUGcGUggcgugaucagCGAGGCCGCGGUg -3'
miRNA:   3'- -CUGCAg------CUUGAC-CG-----------GCUCCGGCGCCA- -5'
28068 5' -60.6 NC_005887.1 + 5898 0.7 0.199873
Target:  5'- uGACcgcugCGGGCUGGCCGAagggcaagaagccGGCCGCGcGg -3'
miRNA:   3'- -CUGca---GCUUGACCGGCU-------------CCGGCGC-Ca -5'
28068 5' -60.6 NC_005887.1 + 15638 0.72 0.149456
Target:  5'- uAUGUCGAGCUGcCCGcGGCCGCGcGa -3'
miRNA:   3'- cUGCAGCUUGACcGGCuCCGGCGC-Ca -5'
28068 5' -60.6 NC_005887.1 + 11117 0.73 0.126909
Target:  5'- cGCG-CGaAGCUGGCCGAGgcGCCGUGGc -3'
miRNA:   3'- cUGCaGC-UUGACCGGCUC--CGGCGCCa -5'
28068 5' -60.6 NC_005887.1 + 3768 0.73 0.120121
Target:  5'- cGCGUCGuACUGGCuCGAcgagGGCCGCGa- -3'
miRNA:   3'- cUGCAGCuUGACCG-GCU----CCGGCGCca -5'
28068 5' -60.6 NC_005887.1 + 18379 0.77 0.059545
Target:  5'- cGCGcUCGAGCagugGGCCGAGGUCGuCGGUg -3'
miRNA:   3'- cUGC-AGCUUGa---CCGGCUCCGGC-GCCA- -5'
28068 5' -60.6 NC_005887.1 + 11533 1.07 0.000329
Target:  5'- gGACGUCGAACUGGCCGAGGCCGCGGUg -3'
miRNA:   3'- -CUGCAGCUUGACCGGCUCCGGCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.