miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 31417 0.69 0.228307
Target:  5'- cUGCGCguaaucGGGCgugagcaggccgGCCGACGUCAUcugCGCCGg -3'
miRNA:   3'- cAUGCG------CCCG------------CGGCUGUAGUG---GCGGC- -5'
28069 3' -60.6 NC_005887.1 + 6037 0.69 0.234227
Target:  5'- aGUGCGC-GGCGUCGAC--CGCCGCg- -3'
miRNA:   3'- -CAUGCGcCCGCGGCUGuaGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 37204 0.69 0.250223
Target:  5'- ---aGCGGcGCGCCGACGUCGggcagcgcggucaUGCCGa -3'
miRNA:   3'- caugCGCC-CGCGGCUGUAGUg------------GCGGC- -5'
28069 3' -60.6 NC_005887.1 + 8380 0.69 0.259204
Target:  5'- -gGCGCcGGUGCUGACGgaCGCCGCaCGc -3'
miRNA:   3'- caUGCGcCCGCGGCUGUa-GUGGCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 34156 0.69 0.252763
Target:  5'- gGUGCGCGGGUa--GACAUCgaACUGCCc -3'
miRNA:   3'- -CAUGCGCCCGcggCUGUAG--UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 12239 0.69 0.246454
Target:  5'- aUGCaCGGGCGuUCGGCGUaGCCGUCGa -3'
miRNA:   3'- cAUGcGCCCGC-GGCUGUAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 32826 0.69 0.252763
Target:  5'- ---aGCGGGCcgaCGugAUgGCCGCCGu -3'
miRNA:   3'- caugCGCCCGcg-GCugUAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 13760 0.69 0.252126
Target:  5'- -gGCGCGaGgacgauuuccagaGCGCCGugAagcaggUCACCGCCGc -3'
miRNA:   3'- caUGCGC-C-------------CGCGGCugU------AGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 15017 0.69 0.240276
Target:  5'- cUGCGCGuGGCGCaguCGACGUgGCCGgaCGa -3'
miRNA:   3'- cAUGCGC-CCGCG---GCUGUAgUGGCg-GC- -5'
28069 3' -60.6 NC_005887.1 + 14011 0.69 0.240276
Target:  5'- -cGCGCGccuccgcaacCGCCGGCG-CGCCGCCGg -3'
miRNA:   3'- caUGCGCcc--------GCGGCUGUaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 40763 0.68 0.293431
Target:  5'- cGUugGC--GCGCCG-CG-CGCCGCCGa -3'
miRNA:   3'- -CAugCGccCGCGGCuGUaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 17325 0.68 0.293431
Target:  5'- cUGCGCuaccGGCugGCCGGCG--GCCGCCGg -3'
miRNA:   3'- cAUGCGc---CCG--CGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 9903 0.68 0.298495
Target:  5'- -cGCGCaGuGGCugcgcaaccugaucGCCGccggccACAUCGCCGCCGg -3'
miRNA:   3'- caUGCG-C-CCG--------------CGGC------UGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 2952 0.68 0.300686
Target:  5'- -aACGCGGucGCGaCC-ACGguugCGCCGCCGg -3'
miRNA:   3'- caUGCGCC--CGC-GGcUGUa---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 6458 0.68 0.300686
Target:  5'- aGUGCGCgaccugaaguacGGGCG-CGGCGUCGCggugucUGCCGa -3'
miRNA:   3'- -CAUGCG------------CCCGCgGCUGUAGUG------GCGGC- -5'
28069 3' -60.6 NC_005887.1 + 21063 0.68 0.300686
Target:  5'- -aAUGUGGGCGaCGccagcagcGCAUaCGCCGCCGc -3'
miRNA:   3'- caUGCGCCCGCgGC--------UGUA-GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 18549 0.68 0.286314
Target:  5'- gGUGgGCGgcGGCGCCGGCuUCGCgGgCGa -3'
miRNA:   3'- -CAUgCGC--CCGCGGCUGuAGUGgCgGC- -5'
28069 3' -60.6 NC_005887.1 + 14205 0.68 0.281413
Target:  5'- -gGCGCGgccucggacagggcGGCGCCGcgcuguucggcgcgGCAUCcgaucuuGCCGCCGg -3'
miRNA:   3'- caUGCGC--------------CCGCGGC--------------UGUAG-------UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 24954 0.68 0.272489
Target:  5'- -cGCGCGGGcCGCCuuGCG-CGCgGCCGc -3'
miRNA:   3'- caUGCGCCC-GCGGc-UGUaGUGgCGGC- -5'
28069 3' -60.6 NC_005887.1 + 40141 0.68 0.265779
Target:  5'- gGUGCGCGcugcGCGCCG-CGcUCGCCGCg- -3'
miRNA:   3'- -CAUGCGCc---CGCGGCuGU-AGUGGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.