miRNA display CGI


Results 61 - 80 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 26897 0.68 0.286314
Target:  5'- gGUGCGCGGucaucGCGgCGACGUCGuCCGguugaCCGa -3'
miRNA:   3'- -CAUGCGCC-----CGCgGCUGUAGU-GGC-----GGC- -5'
28069 3' -60.6 NC_005887.1 + 6318 0.68 0.286314
Target:  5'- uUGCGCcucgccGGCGCCGAgGUgaCGCUGCUGg -3'
miRNA:   3'- cAUGCGc-----CCGCGGCUgUA--GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 12847 0.68 0.279333
Target:  5'- -aACGCGccCGCCGuCGagGCCGCCGg -3'
miRNA:   3'- caUGCGCccGCGGCuGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 16493 0.68 0.272489
Target:  5'- ---gGCGGGCuggucggcgauGUCGcaggccgaucGCGUCGCCGCCGg -3'
miRNA:   3'- caugCGCCCG-----------CGGC----------UGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 24954 0.68 0.272489
Target:  5'- -cGCGCGGGcCGCCuuGCG-CGCgGCCGc -3'
miRNA:   3'- caUGCGCCC-GCGGc-UGUaGUGgCGGC- -5'
28069 3' -60.6 NC_005887.1 + 39453 0.68 0.265779
Target:  5'- cGUuCGCGGcG-GCCGACGUguCCGUCGu -3'
miRNA:   3'- -CAuGCGCC-CgCGGCUGUAguGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 35829 0.68 0.272489
Target:  5'- -gGCGgGGGCGauGcCGUCAUUGCCGu -3'
miRNA:   3'- caUGCgCCCGCggCuGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 12192 0.68 0.279333
Target:  5'- --cCGCGacuucGaCGCCGGCAUCGgCGCCGa -3'
miRNA:   3'- cauGCGCc----C-GCGGCUGUAGUgGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 35832 0.68 0.300686
Target:  5'- cGUGCGCc-GCGUCGGCGuagaUCAUCGCCu -3'
miRNA:   3'- -CAUGCGccCGCGGCUGU----AGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 40763 0.68 0.293431
Target:  5'- cGUugGC--GCGCCG-CG-CGCCGCCGa -3'
miRNA:   3'- -CAugCGccCGCGGCuGUaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 16310 0.68 0.286314
Target:  5'- -cACGCaGGaCGCCGGCcuguucgagGUCGCCGCg- -3'
miRNA:   3'- caUGCGcCC-GCGGCUG---------UAGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 18549 0.68 0.286314
Target:  5'- gGUGgGCGgcGGCGCCGGCuUCGCgGgCGa -3'
miRNA:   3'- -CAUgCGC--CCGCGGCUGuAGUGgCgGC- -5'
28069 3' -60.6 NC_005887.1 + 14205 0.68 0.281413
Target:  5'- -gGCGCGgccucggacagggcGGCGCCGcgcuguucggcgcgGCAUCcgaucuuGCCGCCGg -3'
miRNA:   3'- caUGCGC--------------CCGCGGC--------------UGUAG-------UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 19189 0.67 0.339028
Target:  5'- -gGCGCGGGCGUggaGACAggCGgCGCgGu -3'
miRNA:   3'- caUGCGCCCGCGg--CUGUa-GUgGCGgC- -5'
28069 3' -60.6 NC_005887.1 + 34340 0.67 0.34711
Target:  5'- uGUGC-CGuGGCGCCGGC--CACgGCUGg -3'
miRNA:   3'- -CAUGcGC-CCGCGGCUGuaGUGgCGGC- -5'
28069 3' -60.6 NC_005887.1 + 4773 0.67 0.345483
Target:  5'- -aGCGCGGGaagcugacgccaGCCGGCGagGCCGUg- -3'
miRNA:   3'- caUGCGCCCg-----------CGGCUGUagUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 27233 0.67 0.339028
Target:  5'- -gGCGCaucgcGGCGCaacuGCAUCGCgCGCCGg -3'
miRNA:   3'- caUGCGc----CCGCGgc--UGUAGUG-GCGGC- -5'
28069 3' -60.6 NC_005887.1 + 41248 0.67 0.331084
Target:  5'- -cACGCaccugcucGGCGUCGGCAauggCGCCGUCGa -3'
miRNA:   3'- caUGCGc-------CCGCGGCUGUa---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 4624 0.67 0.308078
Target:  5'- --cCGC-GGCGCCGG--UgGCCGCCGg -3'
miRNA:   3'- cauGCGcCCGCGGCUguAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 41970 0.67 0.307333
Target:  5'- cGUGCGCGGcGCGCuCGccuaucaGCAgCACgGCCu -3'
miRNA:   3'- -CAUGCGCC-CGCG-GC-------UGUaGUGgCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.