miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 23622 0.67 0.320193
Target:  5'- cUGCGCGaucuucagcaagucGGCGCCGAUGUgcguguccuugccCugCGCCGc -3'
miRNA:   3'- cAUGCGC--------------CCGCGGCUGUA-------------GugGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 9672 0.67 0.339028
Target:  5'- uGUACGCGGuuGCCGAagcgCGCaCGCgCGa -3'
miRNA:   3'- -CAUGCGCCcgCGGCUgua-GUG-GCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 11816 0.67 0.339028
Target:  5'- cUGCGUGGcGUcucgGCCGACG--GCCGCCu -3'
miRNA:   3'- cAUGCGCC-CG----CGGCUGUagUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 33498 0.67 0.339028
Target:  5'- -gACG-GGcGCGCCGGCGUUcacaaGCUGCCc -3'
miRNA:   3'- caUGCgCC-CGCGGCUGUAG-----UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 34340 0.67 0.34711
Target:  5'- uGUGC-CGuGGCGCCGGC--CACgGCUGg -3'
miRNA:   3'- -CAUGcGC-CCGCGGCUGuaGUGgCGGC- -5'
28069 3' -60.6 NC_005887.1 + 4773 0.67 0.345483
Target:  5'- -aGCGCGGGaagcugacgccaGCCGGCGagGCCGUg- -3'
miRNA:   3'- caUGCGCCCg-----------CGGCUGUagUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 27233 0.67 0.339028
Target:  5'- -gGCGCaucgcGGCGCaacuGCAUCGCgCGCCGg -3'
miRNA:   3'- caUGCGc----CCGCGgc--UGUAGUG-GCGGC- -5'
28069 3' -60.6 NC_005887.1 + 19189 0.67 0.339028
Target:  5'- -gGCGCGGGCGUggaGACAggCGgCGCgGu -3'
miRNA:   3'- caUGCGCCCGCGg--CUGUa-GUgGCGgC- -5'
28069 3' -60.6 NC_005887.1 + 41248 0.67 0.331084
Target:  5'- -cACGCaccugcucGGCGUCGGCAauggCGCCGUCGa -3'
miRNA:   3'- caUGCGc-------CCGCGGCUGUa---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 11050 0.67 0.315609
Target:  5'- -gGCGCaGGCGUgGACAcugauuuccgCGCCGCUGc -3'
miRNA:   3'- caUGCGcCCGCGgCUGUa---------GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 6176 0.67 0.315609
Target:  5'- -aGCGCcucgacccgaacGGGaagGUCGACAUCAUCGUCGa -3'
miRNA:   3'- caUGCG------------CCCg--CGGCUGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 37286 0.67 0.339028
Target:  5'- gGUAUGCGGGCugaucuuCCGGCGcggcCAUUGCCGu -3'
miRNA:   3'- -CAUGCGCCCGc------GGCUGUa---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 41970 0.67 0.307333
Target:  5'- cGUGCGCGGcGCGCuCGccuaucaGCAgCACgGCCu -3'
miRNA:   3'- -CAUGCGCC-CGCG-GC-------UGUaGUGgCGGc -5'
28069 3' -60.6 NC_005887.1 + 4624 0.67 0.308078
Target:  5'- --cCGC-GGCGCCGG--UgGCCGCCGg -3'
miRNA:   3'- cauGCGcCCGCGGCUguAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 24557 0.67 0.308078
Target:  5'- -gGC-CGGGCGCCcAUgAUCGCCGUCa -3'
miRNA:   3'- caUGcGCCCGCGGcUG-UAGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 36173 0.67 0.315609
Target:  5'- -gGCGCGucaccGUGCCGACcgggAUCACCguGCCGa -3'
miRNA:   3'- caUGCGCc----CGCGGCUG----UAGUGG--CGGC- -5'
28069 3' -60.6 NC_005887.1 + 9099 0.66 0.407458
Target:  5'- -aGCGCGGGCaCCGGC---GCCGUUa -3'
miRNA:   3'- caUGCGCCCGcGGCUGuagUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 28191 0.66 0.407458
Target:  5'- -cGgGCuGuGCGCCG-CAUCAgCGCCGc -3'
miRNA:   3'- caUgCGcC-CGCGGCuGUAGUgGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 12075 0.66 0.407458
Target:  5'- cGUGCGCGGcacgaucgucGCGCCGgACggCAagCGCCu -3'
miRNA:   3'- -CAUGCGCC----------CGCGGC-UGuaGUg-GCGGc -5'
28069 3' -60.6 NC_005887.1 + 25846 0.66 0.407458
Target:  5'- -gACGCGaucGGCcugCGACAUCGCCGaCCa -3'
miRNA:   3'- caUGCGC---CCGcg-GCUGUAGUGGC-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.