Results 121 - 132 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 6388 | 0.66 | 0.395762 |
Target: 5'- -aACGCGGggcgaagggcacgaGCGacugCGugAUCAUCGCCGu -3' miRNA: 3'- caUGCGCC--------------CGCg---GCugUAGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 17742 | 0.66 | 0.398442 |
Target: 5'- -cACGCGuGCgGCCGcaAgAUCAUCGCCGc -3' miRNA: 3'- caUGCGCcCG-CGGC--UgUAGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 16458 | 0.66 | 0.389554 |
Target: 5'- -cGCGCGGGCaugcGCuCGACcgCGCgGCa- -3' miRNA: 3'- caUGCGCCCG----CG-GCUGuaGUGgCGgc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 41285 | 0.66 | 0.398442 |
Target: 5'- cUGCGCacGGGCGCgCuGCu--GCCGCCGg -3' miRNA: 3'- cAUGCG--CCCGCG-GcUGuagUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 9099 | 0.66 | 0.407458 |
Target: 5'- -aGCGCGGGCaCCGGC---GCCGUUa -3' miRNA: 3'- caUGCGCCCGcGGCUGuagUGGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 28191 | 0.66 | 0.407458 |
Target: 5'- -cGgGCuGuGCGCCG-CAUCAgCGCCGc -3' miRNA: 3'- caUgCGcC-CGCGGCuGUAGUgGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 12075 | 0.66 | 0.407458 |
Target: 5'- cGUGCGCGGcacgaucgucGCGCCGgACggCAagCGCCu -3' miRNA: 3'- -CAUGCGCC----------CGCGGC-UGuaGUg-GCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 9060 | 0.66 | 0.407458 |
Target: 5'- cGUACGCGGauggaaguGCGCCGGCu--GCgGCgGg -3' miRNA: 3'- -CAUGCGCC--------CGCGGCUGuagUGgCGgC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 26220 | 0.66 | 0.406551 |
Target: 5'- gGUugGCGGggugguuGCGCgCGGCG-CAgCGCCa -3' miRNA: 3'- -CAugCGCC-------CGCG-GCUGUaGUgGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 624 | 0.66 | 0.406551 |
Target: 5'- -cGCGcCGGGaucggauCGCCGccCGUCAUCGCCu -3' miRNA: 3'- caUGC-GCCC-------GCGGCu-GUAGUGGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 27061 | 0.66 | 0.398442 |
Target: 5'- gGUAUGCGGcagucucguuCGCCGGCGgacgcUCGCCGCg- -3' miRNA: 3'- -CAUGCGCCc---------GCGGCUGU-----AGUGGCGgc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 13399 | 0.66 | 0.380798 |
Target: 5'- -gGCGCGGcggaCGUCGGCGgcaaGCCGCUGc -3' miRNA: 3'- caUGCGCCc---GCGGCUGUag--UGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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