Results 41 - 60 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 24811 | 0.69 | 0.234227 |
Target: 5'- aGUACGCGc-CGaCCGACGUCauGCCGCCc -3' miRNA: 3'- -CAUGCGCccGC-GGCUGUAG--UGGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 15017 | 0.69 | 0.240276 |
Target: 5'- cUGCGCGuGGCGCaguCGACGUgGCCGgaCGa -3' miRNA: 3'- cAUGCGC-CCGCG---GCUGUAgUGGCg-GC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 14011 | 0.69 | 0.240276 |
Target: 5'- -cGCGCGccuccgcaacCGCCGGCG-CGCCGCCGg -3' miRNA: 3'- caUGCGCcc--------GCGGCUGUaGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 12239 | 0.69 | 0.246454 |
Target: 5'- aUGCaCGGGCGuUCGGCGUaGCCGUCGa -3' miRNA: 3'- cAUGcGCCCGC-GGCUGUAgUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 37204 | 0.69 | 0.250223 |
Target: 5'- ---aGCGGcGCGCCGACGUCGggcagcgcggucaUGCCGa -3' miRNA: 3'- caugCGCC-CGCGGCUGUAGUg------------GCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 13760 | 0.69 | 0.252126 |
Target: 5'- -gGCGCGaGgacgauuuccagaGCGCCGugAagcaggUCACCGCCGc -3' miRNA: 3'- caUGCGC-C-------------CGCGGCugU------AGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 34156 | 0.69 | 0.252763 |
Target: 5'- gGUGCGCGGGUa--GACAUCgaACUGCCc -3' miRNA: 3'- -CAUGCGCCCGcggCUGUAG--UGGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 19099 | 0.69 | 0.252763 |
Target: 5'- cUGCGCcuuuuGcGCGCCGAC--CGCCGCCGc -3' miRNA: 3'- cAUGCGc----C-CGCGGCUGuaGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 32826 | 0.69 | 0.252763 |
Target: 5'- ---aGCGGGCcgaCGugAUgGCCGCCGu -3' miRNA: 3'- caugCGCCCGcg-GCugUAgUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 8380 | 0.69 | 0.259204 |
Target: 5'- -gGCGCcGGUGCUGACGgaCGCCGCaCGc -3' miRNA: 3'- caUGCGcCCGCGGCUGUa-GUGGCG-GC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 39453 | 0.68 | 0.265779 |
Target: 5'- cGUuCGCGGcG-GCCGACGUguCCGUCGu -3' miRNA: 3'- -CAuGCGCC-CgCGGCUGUAguGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 1588 | 0.68 | 0.265779 |
Target: 5'- gGUGgGUGGGUGgCGGCcUCgaACCGCCa -3' miRNA: 3'- -CAUgCGCCCGCgGCUGuAG--UGGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 8245 | 0.68 | 0.265779 |
Target: 5'- cUGC-CGaGCGCuCGGCGUCACCGCUc -3' miRNA: 3'- cAUGcGCcCGCG-GCUGUAGUGGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 40141 | 0.68 | 0.265779 |
Target: 5'- gGUGCGCGcugcGCGCCG-CGcUCGCCGCg- -3' miRNA: 3'- -CAUGCGCc---CGCGGCuGU-AGUGGCGgc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 35829 | 0.68 | 0.272489 |
Target: 5'- -gGCGgGGGCGauGcCGUCAUUGCCGu -3' miRNA: 3'- caUGCgCCCGCggCuGUAGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 24954 | 0.68 | 0.272489 |
Target: 5'- -cGCGCGGGcCGCCuuGCG-CGCgGCCGc -3' miRNA: 3'- caUGCGCCC-GCGGc-UGUaGUGgCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 16493 | 0.68 | 0.272489 |
Target: 5'- ---gGCGGGCuggucggcgauGUCGcaggccgaucGCGUCGCCGCCGg -3' miRNA: 3'- caugCGCCCG-----------CGGC----------UGUAGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 12192 | 0.68 | 0.279333 |
Target: 5'- --cCGCGacuucGaCGCCGGCAUCGgCGCCGa -3' miRNA: 3'- cauGCGCc----C-GCGGCUGUAGUgGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 12847 | 0.68 | 0.279333 |
Target: 5'- -aACGCGccCGCCGuCGagGCCGCCGg -3' miRNA: 3'- caUGCGCccGCGGCuGUagUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 14205 | 0.68 | 0.281413 |
Target: 5'- -gGCGCGgccucggacagggcGGCGCCGcgcuguucggcgcgGCAUCcgaucuuGCCGCCGg -3' miRNA: 3'- caUGCGC--------------CCGCGGC--------------UGUAG-------UGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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