Results 61 - 80 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 1438 | 0.68 | 0.284205 |
Target: 5'- gGUGCGCGcgcgguagcccuucGGCgGCuCGuCGUCACCGUCGc -3' miRNA: 3'- -CAUGCGC--------------CCG-CG-GCuGUAGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 6318 | 0.68 | 0.286314 |
Target: 5'- uUGCGCcucgccGGCGCCGAgGUgaCGCUGCUGg -3' miRNA: 3'- cAUGCGc-----CCGCGGCUgUA--GUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 16310 | 0.68 | 0.286314 |
Target: 5'- -cACGCaGGaCGCCGGCcuguucgagGUCGCCGCg- -3' miRNA: 3'- caUGCGcCC-GCGGCUG---------UAGUGGCGgc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 18549 | 0.68 | 0.286314 |
Target: 5'- gGUGgGCGgcGGCGCCGGCuUCGCgGgCGa -3' miRNA: 3'- -CAUgCGC--CCGCGGCUGuAGUGgCgGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 26897 | 0.68 | 0.286314 |
Target: 5'- gGUGCGCGGucaucGCGgCGACGUCGuCCGguugaCCGa -3' miRNA: 3'- -CAUGCGCC-----CGCgGCUGUAGU-GGC-----GGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 19206 | 0.68 | 0.292713 |
Target: 5'- -cACGgGGGUcgaggaucgucacGCCGuCAccUCACCGCCa -3' miRNA: 3'- caUGCgCCCG-------------CGGCuGU--AGUGGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 40763 | 0.68 | 0.293431 |
Target: 5'- cGUugGC--GCGCCG-CG-CGCCGCCGa -3' miRNA: 3'- -CAugCGccCGCGGCuGUaGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 17325 | 0.68 | 0.293431 |
Target: 5'- cUGCGCuaccGGCugGCCGGCG--GCCGCCGg -3' miRNA: 3'- cAUGCGc---CCG--CGGCUGUagUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 9903 | 0.68 | 0.298495 |
Target: 5'- -cGCGCaGuGGCugcgcaaccugaucGCCGccggccACAUCGCCGCCGg -3' miRNA: 3'- caUGCG-C-CCG--------------CGGC------UGUAGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 35832 | 0.68 | 0.300686 |
Target: 5'- cGUGCGCc-GCGUCGGCGuagaUCAUCGCCu -3' miRNA: 3'- -CAUGCGccCGCGGCUGU----AGUGGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 2952 | 0.68 | 0.300686 |
Target: 5'- -aACGCGGucGCGaCC-ACGguugCGCCGCCGg -3' miRNA: 3'- caUGCGCC--CGC-GGcUGUa---GUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 21063 | 0.68 | 0.300686 |
Target: 5'- -aAUGUGGGCGaCGccagcagcGCAUaCGCCGCCGc -3' miRNA: 3'- caUGCGCCCGCgGC--------UGUA-GUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 6458 | 0.68 | 0.300686 |
Target: 5'- aGUGCGCgaccugaaguacGGGCG-CGGCGUCGCggugucUGCCGa -3' miRNA: 3'- -CAUGCG------------CCCGCgGCUGUAGUG------GCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 41970 | 0.67 | 0.307333 |
Target: 5'- cGUGCGCGGcGCGCuCGccuaucaGCAgCACgGCCu -3' miRNA: 3'- -CAUGCGCC-CGCG-GC-------UGUaGUGgCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 4624 | 0.67 | 0.308078 |
Target: 5'- --cCGC-GGCGCCGG--UgGCCGCCGg -3' miRNA: 3'- cauGCGcCCGCGGCUguAgUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 19570 | 0.67 | 0.308078 |
Target: 5'- ---aGCGGccGCGCCGGCGUCGa-GCCa -3' miRNA: 3'- caugCGCC--CGCGGCUGUAGUggCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 24557 | 0.67 | 0.308078 |
Target: 5'- -gGC-CGGGCGCCcAUgAUCGCCGUCa -3' miRNA: 3'- caUGcGCCCGCGGcUG-UAGUGGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 10050 | 0.67 | 0.308078 |
Target: 5'- --cUGCGGcGCGCCGGCuggcccgacgAUCGCC-CCGu -3' miRNA: 3'- cauGCGCC-CGCGGCUG----------UAGUGGcGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 6176 | 0.67 | 0.315609 |
Target: 5'- -aGCGCcucgacccgaacGGGaagGUCGACAUCAUCGUCGa -3' miRNA: 3'- caUGCG------------CCCg--CGGCUGUAGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 11050 | 0.67 | 0.315609 |
Target: 5'- -gGCGCaGGCGUgGACAcugauuuccgCGCCGCUGc -3' miRNA: 3'- caUGCGcCCGCGgCUGUa---------GUGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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