miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 35832 0.68 0.300686
Target:  5'- cGUGCGCc-GCGUCGGCGuagaUCAUCGCCu -3'
miRNA:   3'- -CAUGCGccCGCGGCUGU----AGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 6458 0.68 0.300686
Target:  5'- aGUGCGCgaccugaaguacGGGCG-CGGCGUCGCggugucUGCCGa -3'
miRNA:   3'- -CAUGCG------------CCCGCgGCUGUAGUG------GCGGC- -5'
28069 3' -60.6 NC_005887.1 + 2952 0.68 0.300686
Target:  5'- -aACGCGGucGCGaCC-ACGguugCGCCGCCGg -3'
miRNA:   3'- caUGCGCC--CGC-GGcUGUa---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 9903 0.68 0.298495
Target:  5'- -cGCGCaGuGGCugcgcaaccugaucGCCGccggccACAUCGCCGCCGg -3'
miRNA:   3'- caUGCG-C-CCG--------------CGGC------UGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 40763 0.68 0.293431
Target:  5'- cGUugGC--GCGCCG-CG-CGCCGCCGa -3'
miRNA:   3'- -CAugCGccCGCGGCuGUaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 17325 0.68 0.293431
Target:  5'- cUGCGCuaccGGCugGCCGGCG--GCCGCCGg -3'
miRNA:   3'- cAUGCGc---CCG--CGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 19206 0.68 0.292713
Target:  5'- -cACGgGGGUcgaggaucgucacGCCGuCAccUCACCGCCa -3'
miRNA:   3'- caUGCgCCCG-------------CGGCuGU--AGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 26897 0.68 0.286314
Target:  5'- gGUGCGCGGucaucGCGgCGACGUCGuCCGguugaCCGa -3'
miRNA:   3'- -CAUGCGCC-----CGCgGCUGUAGU-GGC-----GGC- -5'
28069 3' -60.6 NC_005887.1 + 6318 0.68 0.286314
Target:  5'- uUGCGCcucgccGGCGCCGAgGUgaCGCUGCUGg -3'
miRNA:   3'- cAUGCGc-----CCGCGGCUgUA--GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 16310 0.68 0.286314
Target:  5'- -cACGCaGGaCGCCGGCcuguucgagGUCGCCGCg- -3'
miRNA:   3'- caUGCGcCC-GCGGCUG---------UAGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 18549 0.68 0.286314
Target:  5'- gGUGgGCGgcGGCGCCGGCuUCGCgGgCGa -3'
miRNA:   3'- -CAUgCGC--CCGCGGCUGuAGUGgCgGC- -5'
28069 3' -60.6 NC_005887.1 + 1438 0.68 0.284205
Target:  5'- gGUGCGCGcgcgguagcccuucGGCgGCuCGuCGUCACCGUCGc -3'
miRNA:   3'- -CAUGCGC--------------CCG-CG-GCuGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 14205 0.68 0.281413
Target:  5'- -gGCGCGgccucggacagggcGGCGCCGcgcuguucggcgcgGCAUCcgaucuuGCCGCCGg -3'
miRNA:   3'- caUGCGC--------------CCGCGGC--------------UGUAG-------UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 12847 0.68 0.279333
Target:  5'- -aACGCGccCGCCGuCGagGCCGCCGg -3'
miRNA:   3'- caUGCGCccGCGGCuGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 12192 0.68 0.279333
Target:  5'- --cCGCGacuucGaCGCCGGCAUCGgCGCCGa -3'
miRNA:   3'- cauGCGCc----C-GCGGCUGUAGUgGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 16493 0.68 0.272489
Target:  5'- ---gGCGGGCuggucggcgauGUCGcaggccgaucGCGUCGCCGCCGg -3'
miRNA:   3'- caugCGCCCG-----------CGGC----------UGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 24954 0.68 0.272489
Target:  5'- -cGCGCGGGcCGCCuuGCG-CGCgGCCGc -3'
miRNA:   3'- caUGCGCCC-GCGGc-UGUaGUGgCGGC- -5'
28069 3' -60.6 NC_005887.1 + 35829 0.68 0.272489
Target:  5'- -gGCGgGGGCGauGcCGUCAUUGCCGu -3'
miRNA:   3'- caUGCgCCCGCggCuGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 40141 0.68 0.265779
Target:  5'- gGUGCGCGcugcGCGCCG-CGcUCGCCGCg- -3'
miRNA:   3'- -CAUGCGCc---CGCGGCuGU-AGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 1588 0.68 0.265779
Target:  5'- gGUGgGUGGGUGgCGGCcUCgaACCGCCa -3'
miRNA:   3'- -CAUgCGCCCGCgGCUGuAG--UGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.