Results 81 - 100 of 132 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 39453 | 0.68 | 0.265779 |
Target: 5'- cGUuCGCGGcG-GCCGACGUguCCGUCGu -3' miRNA: 3'- -CAuGCGCC-CgCGGCUGUAguGGCGGC- -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 8245 | 0.68 | 0.265779 |
Target: 5'- cUGC-CGaGCGCuCGGCGUCACCGCUc -3' miRNA: 3'- cAUGcGCcCGCG-GCUGUAGUGGCGGc -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 8380 | 0.69 | 0.259204 |
Target: 5'- -gGCGCcGGUGCUGACGgaCGCCGCaCGc -3' miRNA: 3'- caUGCGcCCGCGGCUGUa-GUGGCG-GC- -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 34156 | 0.69 | 0.252763 |
Target: 5'- gGUGCGCGGGUa--GACAUCgaACUGCCc -3' miRNA: 3'- -CAUGCGCCCGcggCUGUAG--UGGCGGc -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 19099 | 0.69 | 0.252763 |
Target: 5'- cUGCGCcuuuuGcGCGCCGAC--CGCCGCCGc -3' miRNA: 3'- cAUGCGc----C-CGCGGCUGuaGUGGCGGC- -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 32826 | 0.69 | 0.252763 |
Target: 5'- ---aGCGGGCcgaCGugAUgGCCGCCGu -3' miRNA: 3'- caugCGCCCGcg-GCugUAgUGGCGGC- -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 13760 | 0.69 | 0.252126 |
Target: 5'- -gGCGCGaGgacgauuuccagaGCGCCGugAagcaggUCACCGCCGc -3' miRNA: 3'- caUGCGC-C-------------CGCGGCugU------AGUGGCGGC- -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 37204 | 0.69 | 0.250223 |
Target: 5'- ---aGCGGcGCGCCGACGUCGggcagcgcggucaUGCCGa -3' miRNA: 3'- caugCGCC-CGCGGCUGUAGUg------------GCGGC- -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 12239 | 0.69 | 0.246454 |
Target: 5'- aUGCaCGGGCGuUCGGCGUaGCCGUCGa -3' miRNA: 3'- cAUGcGCCCGC-GGCUGUAgUGGCGGC- -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 15017 | 0.69 | 0.240276 |
Target: 5'- cUGCGCGuGGCGCaguCGACGUgGCCGgaCGa -3' miRNA: 3'- cAUGCGC-CCGCG---GCUGUAgUGGCg-GC- -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 14011 | 0.69 | 0.240276 |
Target: 5'- -cGCGCGccuccgcaacCGCCGGCG-CGCCGCCGg -3' miRNA: 3'- caUGCGCcc--------GCGGCUGUaGUGGCGGC- -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 6037 | 0.69 | 0.234227 |
Target: 5'- aGUGCGC-GGCGUCGAC--CGCCGCg- -3' miRNA: 3'- -CAUGCGcCCGCGGCUGuaGUGGCGgc -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 24811 | 0.69 | 0.234227 |
Target: 5'- aGUACGCGc-CGaCCGACGUCauGCCGCCc -3' miRNA: 3'- -CAUGCGCccGC-GGCUGUAG--UGGCGGc -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 19072 | 0.69 | 0.234227 |
Target: 5'- -gGCGCGGGCuG-CGGCA--ACCGCCa -3' miRNA: 3'- caUGCGCCCG-CgGCUGUagUGGCGGc -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 31417 | 0.69 | 0.228307 |
Target: 5'- cUGCGCguaaucGGGCgugagcaggccgGCCGACGUCAUcugCGCCGg -3' miRNA: 3'- cAUGCG------CCCG------------CGGCUGUAGUG---GCGGC- -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 32741 | 0.7 | 0.222514 |
Target: 5'- -aGCGCGGcgcucgcgugcGCGCCGGCGcgCGCCaugcaGCCGg -3' miRNA: 3'- caUGCGCC-----------CGCGGCUGUa-GUGG-----CGGC- -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 19822 | 0.7 | 0.222514 |
Target: 5'- -aACGgGGGCGUCGACGacaCACUGgCGa -3' miRNA: 3'- caUGCgCCCGCGGCUGUa--GUGGCgGC- -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 39835 | 0.7 | 0.220801 |
Target: 5'- -cGCGaCGGGcCGCCGucGCAcaucaaucgaccgcUCACCGCUGa -3' miRNA: 3'- caUGC-GCCC-GCGGC--UGU--------------AGUGGCGGC- -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 6401 | 0.7 | 0.216847 |
Target: 5'- cGUACGCGGaaGUCGACAaggCGCUgGCCGa -3' miRNA: 3'- -CAUGCGCCcgCGGCUGUa--GUGG-CGGC- -5' |
|||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 13621 | 0.7 | 0.216847 |
Target: 5'- -aGCGCGGcGCGCggCGGCcgCACUcaGCCGa -3' miRNA: 3'- caUGCGCC-CGCG--GCUGuaGUGG--CGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home