miRNA display CGI


Results 101 - 120 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 13621 0.7 0.216847
Target:  5'- -aGCGCGGcGCGCggCGGCcgCACUcaGCCGa -3'
miRNA:   3'- caUGCGCC-CGCG--GCUGuaGUGG--CGGC- -5'
28069 3' -60.6 NC_005887.1 + 18411 0.7 0.205883
Target:  5'- cGUGCGCagacGGCcgcgagGCCGACGUCAUCGCg- -3'
miRNA:   3'- -CAUGCGc---CCG------CGGCUGUAGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 14563 0.7 0.200583
Target:  5'- cUGCGUcGGCGCCGuCGUCAuggcgcucuaccUCGCCGg -3'
miRNA:   3'- cAUGCGcCCGCGGCuGUAGU------------GGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 15930 0.7 0.200583
Target:  5'- -cGCGCGGGCcggaaucgaugcGCCGGCcacgCGCCGCa- -3'
miRNA:   3'- caUGCGCCCG------------CGGCUGua--GUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 23974 0.7 0.195402
Target:  5'- gGUuCGCGaGCGCCGGCG-CGCCGUCu -3'
miRNA:   3'- -CAuGCGCcCGCGGCUGUaGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 2937 0.7 0.195402
Target:  5'- cUGCGCaaGCGCCG-CggCACCGCCGc -3'
miRNA:   3'- cAUGCGccCGCGGCuGuaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 18803 0.7 0.195402
Target:  5'- -gAUGCGGGCGgCGucaGCGUaCGCUGCCa -3'
miRNA:   3'- caUGCGCCCGCgGC---UGUA-GUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 35075 0.7 0.19489
Target:  5'- ---aGCGGGCggccgggGCCGAUgucgcgGUCGCUGCCGa -3'
miRNA:   3'- caugCGCCCG-------CGGCUG------UAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 28917 0.7 0.19489
Target:  5'- cGUGCugaGCGGuGCGCCGcuCGUCgcagcagcggcuuGCCGCCGa -3'
miRNA:   3'- -CAUG---CGCC-CGCGGCu-GUAG-------------UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 12554 0.71 0.190338
Target:  5'- -gACGU-GGCGUCGACG--GCCGCCGg -3'
miRNA:   3'- caUGCGcCCGCGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 26833 0.71 0.18539
Target:  5'- cGUGCgcgaGCGGGCgcgucuGCCGGuagcCGUUGCCGCCGg -3'
miRNA:   3'- -CAUG----CGCCCG------CGGCU----GUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 7296 0.71 0.18539
Target:  5'- -cGCuGUGGGUcgucgugucGCCGucCGUCGCCGCCGa -3'
miRNA:   3'- caUG-CGCCCG---------CGGCu-GUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 11386 0.71 0.18539
Target:  5'- -aGCGCagccGGaGCGCUGGCGgccggCGCCGCCa -3'
miRNA:   3'- caUGCG----CC-CGCGGCUGUa----GUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 25045 0.71 0.180556
Target:  5'- -cACGCGGuGCGCCGaaccgGCGUUugCGCgCGc -3'
miRNA:   3'- caUGCGCC-CGCGGC-----UGUAGugGCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 1624 0.71 0.175834
Target:  5'- -gACGCGGGCGgCGACcUCGaaGUCGu -3'
miRNA:   3'- caUGCGCCCGCgGCUGuAGUggCGGC- -5'
28069 3' -60.6 NC_005887.1 + 36914 0.71 0.171222
Target:  5'- aGUGCcaGCGGGCG-CGugGUCG-CGCCGg -3'
miRNA:   3'- -CAUG--CGCCCGCgGCugUAGUgGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 40869 0.71 0.166718
Target:  5'- -cGCGCGaGCGCCG-CA-CGCCGUCGg -3'
miRNA:   3'- caUGCGCcCGCGGCuGUaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 28546 0.72 0.158029
Target:  5'- -cGCGcCGGGCuGCUgaauuuguaGGCGUCGCCGCCc -3'
miRNA:   3'- caUGC-GCCCG-CGG---------CUGUAGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 10371 0.72 0.158029
Target:  5'- cGUACaaCGGcGUGCCGACGUCgacuAUCGCCGg -3'
miRNA:   3'- -CAUGc-GCC-CGCGGCUGUAG----UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 23550 0.72 0.145761
Target:  5'- cGUACGCuGaCGCCGcccGCAUCGCCgGCCGg -3'
miRNA:   3'- -CAUGCGcCcGCGGC---UGUAGUGG-CGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.