Results 41 - 60 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 12075 | 0.66 | 0.407458 |
Target: 5'- cGUGCGCGGcacgaucgucGCGCCGgACggCAagCGCCu -3' miRNA: 3'- -CAUGCGCC----------CGCGGC-UGuaGUg-GCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 12192 | 0.68 | 0.279333 |
Target: 5'- --cCGCGacuucGaCGCCGGCAUCGgCGCCGa -3' miRNA: 3'- cauGCGCc----C-GCGGCUGUAGUgGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 12239 | 0.69 | 0.246454 |
Target: 5'- aUGCaCGGGCGuUCGGCGUaGCCGUCGa -3' miRNA: 3'- cAUGcGCCCGC-GGCUGUAgUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 12554 | 0.71 | 0.190338 |
Target: 5'- -gACGU-GGCGUCGACG--GCCGCCGg -3' miRNA: 3'- caUGCGcCCGCGGCUGUagUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 12847 | 0.68 | 0.279333 |
Target: 5'- -aACGCGccCGCCGuCGagGCCGCCGg -3' miRNA: 3'- caUGCGCccGCGGCuGUagUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 13399 | 0.66 | 0.380798 |
Target: 5'- -gGCGCGGcggaCGUCGGCGgcaaGCCGCUGc -3' miRNA: 3'- caUGCGCCc---GCGGCUGUag--UGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 13621 | 0.7 | 0.216847 |
Target: 5'- -aGCGCGGcGCGCggCGGCcgCACUcaGCCGa -3' miRNA: 3'- caUGCGCC-CGCG--GCUGuaGUGG--CGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 13760 | 0.69 | 0.252126 |
Target: 5'- -gGCGCGaGgacgauuuccagaGCGCCGugAagcaggUCACCGCCGc -3' miRNA: 3'- caUGCGC-C-------------CGCGGCugU------AGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 14011 | 0.69 | 0.240276 |
Target: 5'- -cGCGCGccuccgcaacCGCCGGCG-CGCCGCCGg -3' miRNA: 3'- caUGCGCcc--------GCGGCUGUaGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 14153 | 0.66 | 0.389554 |
Target: 5'- -gACGCGcGGCGCUGAUgcggCGCacaGCCc -3' miRNA: 3'- caUGCGC-CCGCGGCUGua--GUGg--CGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 14205 | 0.68 | 0.281413 |
Target: 5'- -gGCGCGgccucggacagggcGGCGCCGcgcuguucggcgcgGCAUCcgaucuuGCCGCCGg -3' miRNA: 3'- caUGCGC--------------CCGCGGC--------------UGUAG-------UGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 14563 | 0.7 | 0.200583 |
Target: 5'- cUGCGUcGGCGCCGuCGUCAuggcgcucuaccUCGCCGg -3' miRNA: 3'- cAUGCGcCCGCGGCuGUAGU------------GGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 14765 | 0.7 | 0.216847 |
Target: 5'- -aACGCGGGUuacgaccaccucGCCGACcagAUCAacCCGCUGg -3' miRNA: 3'- caUGCGCCCG------------CGGCUG---UAGU--GGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 15017 | 0.69 | 0.240276 |
Target: 5'- cUGCGCGuGGCGCaguCGACGUgGCCGgaCGa -3' miRNA: 3'- cAUGCGC-CCGCG---GCUGUAgUGGCg-GC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 15930 | 0.7 | 0.200583 |
Target: 5'- -cGCGCGGGCcggaaucgaugcGCCGGCcacgCGCCGCa- -3' miRNA: 3'- caUGCGCCCG------------CGGCUGua--GUGGCGgc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 16276 | 0.72 | 0.141869 |
Target: 5'- -cGCGCGGGcCGCUGACG-CGCUGaCCa -3' miRNA: 3'- caUGCGCCC-GCGGCUGUaGUGGC-GGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 16310 | 0.68 | 0.286314 |
Target: 5'- -cACGCaGGaCGCCGGCcuguucgagGUCGCCGCg- -3' miRNA: 3'- caUGCGcCC-GCGGCUG---------UAGUGGCGgc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 16458 | 0.66 | 0.389554 |
Target: 5'- -cGCGCGGGCaugcGCuCGACcgCGCgGCa- -3' miRNA: 3'- caUGCGCCCG----CG-GCUGuaGUGgCGgc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 16493 | 0.68 | 0.272489 |
Target: 5'- ---gGCGGGCuggucggcgauGUCGcaggccgaucGCGUCGCCGCCGg -3' miRNA: 3'- caugCGCCCG-----------CGGC----------UGUAGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 17325 | 0.68 | 0.293431 |
Target: 5'- cUGCGCuaccGGCugGCCGGCG--GCCGCCGg -3' miRNA: 3'- cAUGCGc---CCG--CGGCUGUagUGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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