miRNA display CGI


Results 81 - 100 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 23974 0.7 0.195402
Target:  5'- gGUuCGCGaGCGCCGGCG-CGCCGUCu -3'
miRNA:   3'- -CAuGCGCcCGCGGCUGUaGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 24557 0.67 0.308078
Target:  5'- -gGC-CGGGCGCCcAUgAUCGCCGUCa -3'
miRNA:   3'- caUGcGCCCGCGGcUG-UAGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 24598 0.66 0.398442
Target:  5'- -aAC-CGGGCGCCaucaGCcgCGCgGCCGu -3'
miRNA:   3'- caUGcGCCCGCGGc---UGuaGUGgCGGC- -5'
28069 3' -60.6 NC_005887.1 + 24811 0.69 0.234227
Target:  5'- aGUACGCGc-CGaCCGACGUCauGCCGCCc -3'
miRNA:   3'- -CAUGCGCccGC-GGCUGUAG--UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 24954 0.68 0.272489
Target:  5'- -cGCGCGGGcCGCCuuGCG-CGCgGCCGc -3'
miRNA:   3'- caUGCGCCC-GCGGc-UGUaGUGgCGGC- -5'
28069 3' -60.6 NC_005887.1 + 25006 0.66 0.380798
Target:  5'- -aGCGUcagcucGCGCCGGCG--GCCGCCGg -3'
miRNA:   3'- caUGCGcc----CGCGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 25045 0.71 0.180556
Target:  5'- -cACGCGGuGCGCCGaaccgGCGUUugCGCgCGc -3'
miRNA:   3'- caUGCGCC-CGCGGC-----UGUAGugGCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 25514 0.76 0.077196
Target:  5'- -cGCgGCGGGUGgCGGCAuaaucgUCGCCGCCGa -3'
miRNA:   3'- caUG-CGCCCGCgGCUGU------AGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 25846 0.66 0.407458
Target:  5'- -gACGCGaucGGCcugCGACAUCGCCGaCCa -3'
miRNA:   3'- caUGCGC---CCGcg-GCUGUAGUGGC-GGc -5'
28069 3' -60.6 NC_005887.1 + 26220 0.66 0.406551
Target:  5'- gGUugGCGGggugguuGCGCgCGGCG-CAgCGCCa -3'
miRNA:   3'- -CAugCGCC-------CGCG-GCUGUaGUgGCGGc -5'
28069 3' -60.6 NC_005887.1 + 26502 0.72 0.141869
Target:  5'- -cGCGCGGGCGUuucccuCGAUcgCGCCGCg- -3'
miRNA:   3'- caUGCGCCCGCG------GCUGuaGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 26797 0.66 0.380798
Target:  5'- -aGCGCGGucgcgcGCGCCGA-GUCGUCGCCc -3'
miRNA:   3'- caUGCGCC------CGCGGCUgUAGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 26833 0.71 0.18539
Target:  5'- cGUGCgcgaGCGGGCgcgucuGCCGGuagcCGUUGCCGCCGg -3'
miRNA:   3'- -CAUG----CGCCCG------CGGCU----GUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 26897 0.68 0.286314
Target:  5'- gGUGCGCGGucaucGCGgCGACGUCGuCCGguugaCCGa -3'
miRNA:   3'- -CAUGCGCC-----CGCgGCUGUAGU-GGC-----GGC- -5'
28069 3' -60.6 NC_005887.1 + 27061 0.66 0.398442
Target:  5'- gGUAUGCGGcagucucguuCGCCGGCGgacgcUCGCCGCg- -3'
miRNA:   3'- -CAUGCGCCc---------GCGGCUGU-----AGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 27233 0.67 0.339028
Target:  5'- -gGCGCaucgcGGCGCaacuGCAUCGCgCGCCGg -3'
miRNA:   3'- caUGCGc----CCGCGgc--UGUAGUG-GCGGC- -5'
28069 3' -60.6 NC_005887.1 + 27735 0.66 0.389554
Target:  5'- -aGCGCGcccucgacGGCGCCGACG--GCCGUa- -3'
miRNA:   3'- caUGCGC--------CCGCGGCUGUagUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 27805 0.66 0.380798
Target:  5'- -cGCGCGacaUGCCGAUcgacgCGCCGCCGa -3'
miRNA:   3'- caUGCGCcc-GCGGCUGua---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 28191 0.66 0.407458
Target:  5'- -cGgGCuGuGCGCCG-CAUCAgCGCCGc -3'
miRNA:   3'- caUgCGcC-CGCGGCuGUAGUgGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 28546 0.72 0.158029
Target:  5'- -cGCGcCGGGCuGCUgaauuuguaGGCGUCGCCGCCc -3'
miRNA:   3'- caUGC-GCCCG-CGG---------CUGUAGUGGCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.