miRNA display CGI


Results 101 - 120 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 28917 0.7 0.19489
Target:  5'- cGUGCugaGCGGuGCGCCGcuCGUCgcagcagcggcuuGCCGCCGa -3'
miRNA:   3'- -CAUG---CGCC-CGCGGCu-GUAG-------------UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 29018 0.66 0.362842
Target:  5'- cUGCGCGGcgagauccgcgauGCgGCCGGCGUUGCCgaacgccugGCCGa -3'
miRNA:   3'- cAUGCGCC-------------CG-CGGCUGUAGUGG---------CGGC- -5'
28069 3' -60.6 NC_005887.1 + 29979 0.73 0.138072
Target:  5'- uUGCGCGGuGCugcucggccuGCC-ACGUCACCGCCu -3'
miRNA:   3'- cAUGCGCC-CG----------CGGcUGUAGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 31417 0.69 0.228307
Target:  5'- cUGCGCguaaucGGGCgugagcaggccgGCCGACGUCAUcugCGCCGg -3'
miRNA:   3'- cAUGCG------CCCG------------CGGCUGUAGUG---GCGGC- -5'
28069 3' -60.6 NC_005887.1 + 31509 0.66 0.380798
Target:  5'- -cGCGCGcGGCGCgGAUgaacgcaguuGUCGCuuCGCCa -3'
miRNA:   3'- caUGCGC-CCGCGgCUG----------UAGUG--GCGGc -5'
28069 3' -60.6 NC_005887.1 + 32299 0.66 0.389554
Target:  5'- --uCGuCGGGCcaGCCGGCG-CGCCGCa- -3'
miRNA:   3'- cauGC-GCCCG--CGGCUGUaGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 32741 0.7 0.222514
Target:  5'- -aGCGCGGcgcucgcgugcGCGCCGGCGcgCGCCaugcaGCCGg -3'
miRNA:   3'- caUGCGCC-----------CGCGGCUGUa-GUGG-----CGGC- -5'
28069 3' -60.6 NC_005887.1 + 32826 0.69 0.252763
Target:  5'- ---aGCGGGCcgaCGugAUgGCCGCCGu -3'
miRNA:   3'- caugCGCCCGcg-GCugUAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 33498 0.67 0.339028
Target:  5'- -gACG-GGcGCGCCGGCGUUcacaaGCUGCCc -3'
miRNA:   3'- caUGCgCC-CGCGGCUGUAG-----UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 34156 0.69 0.252763
Target:  5'- gGUGCGCGGGUa--GACAUCgaACUGCCc -3'
miRNA:   3'- -CAUGCGCCCGcggCUGUAG--UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 34340 0.67 0.34711
Target:  5'- uGUGC-CGuGGCGCCGGC--CACgGCUGg -3'
miRNA:   3'- -CAUGcGC-CCGCGGCUGuaGUGgCGGC- -5'
28069 3' -60.6 NC_005887.1 + 35075 0.7 0.19489
Target:  5'- ---aGCGGGCggccgggGCCGAUgucgcgGUCGCUGCCGa -3'
miRNA:   3'- caugCGCCCG-------CGGCUG------UAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 35829 0.68 0.272489
Target:  5'- -gGCGgGGGCGauGcCGUCAUUGCCGu -3'
miRNA:   3'- caUGCgCCCGCggCuGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 35832 0.68 0.300686
Target:  5'- cGUGCGCc-GCGUCGGCGuagaUCAUCGCCu -3'
miRNA:   3'- -CAUGCGccCGCGGCUGU----AGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 36173 0.67 0.315609
Target:  5'- -gGCGCGucaccGUGCCGACcgggAUCACCguGCCGa -3'
miRNA:   3'- caUGCGCc----CGCGGCUG----UAGUGG--CGGC- -5'
28069 3' -60.6 NC_005887.1 + 36532 0.74 0.104943
Target:  5'- --uCGCGacccGCGCCGACucgAUCGCCGCCGu -3'
miRNA:   3'- cauGCGCc---CGCGGCUG---UAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 36631 0.66 0.380798
Target:  5'- -cGCGCGccuucuccuGcGCGUCGugGUCugCGCCc -3'
miRNA:   3'- caUGCGC---------C-CGCGGCugUAGugGCGGc -5'
28069 3' -60.6 NC_005887.1 + 36914 0.71 0.171222
Target:  5'- aGUGCcaGCGGGCG-CGugGUCG-CGCCGg -3'
miRNA:   3'- -CAUG--CGCCCGCgGCugUAGUgGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 36981 0.66 0.388673
Target:  5'- -cGCGCGGGUcgagcucGCCGGCGagcacgCGCagGCCGu -3'
miRNA:   3'- caUGCGCCCG-------CGGCUGUa-----GUGg-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 37204 0.69 0.250223
Target:  5'- ---aGCGGcGCGCCGACGUCGggcagcgcggucaUGCCGa -3'
miRNA:   3'- caugCGCC-CGCGGCUGUAGUg------------GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.