miRNA display CGI


Results 121 - 132 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 37286 0.67 0.339028
Target:  5'- gGUAUGCGGGCugaucuuCCGGCGcggcCAUUGCCGu -3'
miRNA:   3'- -CAUGCGCCCGc------GGCUGUa---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 37768 0.66 0.355329
Target:  5'- cUGCGCGGccuGCGCCucGGCGgcuugCugCGCCu -3'
miRNA:   3'- cAUGCGCC---CGCGG--CUGUa----GugGCGGc -5'
28069 3' -60.6 NC_005887.1 + 38480 0.67 0.323277
Target:  5'- cGUAUGcCGGGCuGCCGcCGUacaCAUCGUCGg -3'
miRNA:   3'- -CAUGC-GCCCG-CGGCuGUA---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 39453 0.68 0.265779
Target:  5'- cGUuCGCGGcG-GCCGACGUguCCGUCGu -3'
miRNA:   3'- -CAuGCGCC-CgCGGCUGUAguGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 39835 0.7 0.220801
Target:  5'- -cGCGaCGGGcCGCCGucGCAcaucaaucgaccgcUCACCGCUGa -3'
miRNA:   3'- caUGC-GCCC-GCGGC--UGU--------------AGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 40141 0.68 0.265779
Target:  5'- gGUGCGCGcugcGCGCCG-CGcUCGCCGCg- -3'
miRNA:   3'- -CAUGCGCc---CGCGGCuGU-AGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 40176 0.66 0.363684
Target:  5'- cUGCGCGacGGCa-CGAagggaAUCGCCGCCGg -3'
miRNA:   3'- cAUGCGC--CCGcgGCUg----UAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 40763 0.68 0.293431
Target:  5'- cGUugGC--GCGCCG-CG-CGCCGCCGa -3'
miRNA:   3'- -CAugCGccCGCGGCuGUaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 40869 0.71 0.166718
Target:  5'- -cGCGCGaGCGCCG-CA-CGCCGUCGg -3'
miRNA:   3'- caUGCGCcCGCGGCuGUaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 41248 0.67 0.331084
Target:  5'- -cACGCaccugcucGGCGUCGGCAauggCGCCGUCGa -3'
miRNA:   3'- caUGCGc-------CCGCGGCUGUa---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 41285 0.66 0.398442
Target:  5'- cUGCGCacGGGCGCgCuGCu--GCCGCCGg -3'
miRNA:   3'- cAUGCG--CCCGCG-GcUGuagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 41970 0.67 0.307333
Target:  5'- cGUGCGCGGcGCGCuCGccuaucaGCAgCACgGCCu -3'
miRNA:   3'- -CAUGCGCC-CGCG-GC-------UGUaGUGgCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.