miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 19570 0.67 0.308078
Target:  5'- ---aGCGGccGCGCCGGCGUCGa-GCCa -3'
miRNA:   3'- caugCGCC--CGCGGCUGUAGUggCGGc -5'
28069 3' -60.6 NC_005887.1 + 19206 0.68 0.292713
Target:  5'- -cACGgGGGUcgaggaucgucacGCCGuCAccUCACCGCCa -3'
miRNA:   3'- caUGCgCCCG-------------CGGCuGU--AGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 19189 0.67 0.339028
Target:  5'- -gGCGCGGGCGUggaGACAggCGgCGCgGu -3'
miRNA:   3'- caUGCGCCCGCGg--CUGUa-GUgGCGgC- -5'
28069 3' -60.6 NC_005887.1 + 19099 0.69 0.252763
Target:  5'- cUGCGCcuuuuGcGCGCCGAC--CGCCGCCGc -3'
miRNA:   3'- cAUGCGc----C-CGCGGCUGuaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 19072 0.69 0.234227
Target:  5'- -gGCGCGGGCuG-CGGCA--ACCGCCa -3'
miRNA:   3'- caUGCGCCCG-CgGCUGUagUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 18803 0.7 0.195402
Target:  5'- -gAUGCGGGCGgCGucaGCGUaCGCUGCCa -3'
miRNA:   3'- caUGCGCCCGCgGC---UGUA-GUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 18549 0.68 0.286314
Target:  5'- gGUGgGCGgcGGCGCCGGCuUCGCgGgCGa -3'
miRNA:   3'- -CAUgCGC--CCGCGGCUGuAGUGgCgGC- -5'
28069 3' -60.6 NC_005887.1 + 18411 0.7 0.205883
Target:  5'- cGUGCGCagacGGCcgcgagGCCGACGUCAUCGCg- -3'
miRNA:   3'- -CAUGCGc---CCG------CGGCUGUAGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 18144 0.78 0.059861
Target:  5'- -aGCGCGGGcCGCCGACGUCgu-GCCGa -3'
miRNA:   3'- caUGCGCCC-GCGGCUGUAGuggCGGC- -5'
28069 3' -60.6 NC_005887.1 + 17965 0.81 0.033783
Target:  5'- aUGCGCGGGCucGCCGGCAUCgGCCGCa- -3'
miRNA:   3'- cAUGCGCCCG--CGGCUGUAG-UGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 17742 0.66 0.398442
Target:  5'- -cACGCGuGCgGCCGcaAgAUCAUCGCCGc -3'
miRNA:   3'- caUGCGCcCG-CGGC--UgUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 17468 0.67 0.339028
Target:  5'- -gAC-CGaGCGCgCGGCAUCGgCCGCCGc -3'
miRNA:   3'- caUGcGCcCGCG-GCUGUAGU-GGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 17325 0.68 0.293431
Target:  5'- cUGCGCuaccGGCugGCCGGCG--GCCGCCGg -3'
miRNA:   3'- cAUGCGc---CCG--CGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 16493 0.68 0.272489
Target:  5'- ---gGCGGGCuggucggcgauGUCGcaggccgaucGCGUCGCCGCCGg -3'
miRNA:   3'- caugCGCCCG-----------CGGC----------UGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 16458 0.66 0.389554
Target:  5'- -cGCGCGGGCaugcGCuCGACcgCGCgGCa- -3'
miRNA:   3'- caUGCGCCCG----CG-GCUGuaGUGgCGgc -5'
28069 3' -60.6 NC_005887.1 + 16310 0.68 0.286314
Target:  5'- -cACGCaGGaCGCCGGCcuguucgagGUCGCCGCg- -3'
miRNA:   3'- caUGCGcCC-GCGGCUG---------UAGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 16276 0.72 0.141869
Target:  5'- -cGCGCGGGcCGCUGACG-CGCUGaCCa -3'
miRNA:   3'- caUGCGCCC-GCGGCUGUaGUGGC-GGc -5'
28069 3' -60.6 NC_005887.1 + 15930 0.7 0.200583
Target:  5'- -cGCGCGGGCcggaaucgaugcGCCGGCcacgCGCCGCa- -3'
miRNA:   3'- caUGCGCCCG------------CGGCUGua--GUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 15017 0.69 0.240276
Target:  5'- cUGCGCGuGGCGCaguCGACGUgGCCGgaCGa -3'
miRNA:   3'- cAUGCGC-CCGCG---GCUGUAgUGGCg-GC- -5'
28069 3' -60.6 NC_005887.1 + 14765 0.7 0.216847
Target:  5'- -aACGCGGGUuacgaccaccucGCCGACcagAUCAacCCGCUGg -3'
miRNA:   3'- caUGCGCCCG------------CGGCUG---UAGU--GGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.