miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 14563 0.7 0.200583
Target:  5'- cUGCGUcGGCGCCGuCGUCAuggcgcucuaccUCGCCGg -3'
miRNA:   3'- cAUGCGcCCGCGGCuGUAGU------------GGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 14205 0.68 0.281413
Target:  5'- -gGCGCGgccucggacagggcGGCGCCGcgcuguucggcgcgGCAUCcgaucuuGCCGCCGg -3'
miRNA:   3'- caUGCGC--------------CCGCGGC--------------UGUAG-------UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 14153 0.66 0.389554
Target:  5'- -gACGCGcGGCGCUGAUgcggCGCacaGCCc -3'
miRNA:   3'- caUGCGC-CCGCGGCUGua--GUGg--CGGc -5'
28069 3' -60.6 NC_005887.1 + 14011 0.69 0.240276
Target:  5'- -cGCGCGccuccgcaacCGCCGGCG-CGCCGCCGg -3'
miRNA:   3'- caUGCGCcc--------GCGGCUGUaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 13760 0.69 0.252126
Target:  5'- -gGCGCGaGgacgauuuccagaGCGCCGugAagcaggUCACCGCCGc -3'
miRNA:   3'- caUGCGC-C-------------CGCGGCugU------AGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 13621 0.7 0.216847
Target:  5'- -aGCGCGGcGCGCggCGGCcgCACUcaGCCGa -3'
miRNA:   3'- caUGCGCC-CGCG--GCUGuaGUGG--CGGC- -5'
28069 3' -60.6 NC_005887.1 + 13399 0.66 0.380798
Target:  5'- -gGCGCGGcggaCGUCGGCGgcaaGCCGCUGc -3'
miRNA:   3'- caUGCGCCc---GCGGCUGUag--UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 12847 0.68 0.279333
Target:  5'- -aACGCGccCGCCGuCGagGCCGCCGg -3'
miRNA:   3'- caUGCGCccGCGGCuGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 12554 0.71 0.190338
Target:  5'- -gACGU-GGCGUCGACG--GCCGCCGg -3'
miRNA:   3'- caUGCGcCCGCGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 12239 0.69 0.246454
Target:  5'- aUGCaCGGGCGuUCGGCGUaGCCGUCGa -3'
miRNA:   3'- cAUGcGCCCGC-GGCUGUAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 12192 0.68 0.279333
Target:  5'- --cCGCGacuucGaCGCCGGCAUCGgCGCCGa -3'
miRNA:   3'- cauGCGCc----C-GCGGCUGUAGUgGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 12075 0.66 0.407458
Target:  5'- cGUGCGCGGcacgaucgucGCGCCGgACggCAagCGCCu -3'
miRNA:   3'- -CAUGCGCC----------CGCGGC-UGuaGUg-GCGGc -5'
28069 3' -60.6 NC_005887.1 + 11816 0.67 0.339028
Target:  5'- cUGCGUGGcGUcucgGCCGACG--GCCGCCu -3'
miRNA:   3'- cAUGCGCC-CG----CGGCUGUagUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 11400 1.09 0.000251
Target:  5'- cGUACGCGGGCGCCGACAUCACCGCCGa -3'
miRNA:   3'- -CAUGCGCCCGCGGCUGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 11386 0.71 0.18539
Target:  5'- -aGCGCagccGGaGCGCUGGCGgccggCGCCGCCa -3'
miRNA:   3'- caUGCG----CC-CGCGGCUGUa----GUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 11050 0.67 0.315609
Target:  5'- -gGCGCaGGCGUgGACAcugauuuccgCGCCGCUGc -3'
miRNA:   3'- caUGCGcCCGCGgCUGUa---------GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 10371 0.72 0.158029
Target:  5'- cGUACaaCGGcGUGCCGACGUCgacuAUCGCCGg -3'
miRNA:   3'- -CAUGc-GCC-CGCGGCUGUAG----UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 10095 0.66 0.355329
Target:  5'- uGUGgGCGGcccGCGCCGACG--GCCaGCUGa -3'
miRNA:   3'- -CAUgCGCC---CGCGGCUGUagUGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 10050 0.67 0.308078
Target:  5'- --cUGCGGcGCGCCGGCuggcccgacgAUCGCC-CCGu -3'
miRNA:   3'- cauGCGCC-CGCGGCUG----------UAGUGGcGGC- -5'
28069 3' -60.6 NC_005887.1 + 9903 0.68 0.298495
Target:  5'- -cGCGCaGuGGCugcgcaaccugaucGCCGccggccACAUCGCCGCCGg -3'
miRNA:   3'- caUGCG-C-CCG--------------CGGC------UGUAGUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.