miRNA display CGI


Results 101 - 120 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 9672 0.67 0.339028
Target:  5'- uGUACGCGGuuGCCGAagcgCGCaCGCgCGa -3'
miRNA:   3'- -CAUGCGCCcgCGGCUgua-GUG-GCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 9099 0.66 0.407458
Target:  5'- -aGCGCGGGCaCCGGC---GCCGUUa -3'
miRNA:   3'- caUGCGCCCGcGGCUGuagUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 9060 0.66 0.407458
Target:  5'- cGUACGCGGauggaaguGCGCCGGCu--GCgGCgGg -3'
miRNA:   3'- -CAUGCGCC--------CGCGGCUGuagUGgCGgC- -5'
28069 3' -60.6 NC_005887.1 + 8844 0.66 0.372174
Target:  5'- --uCGCGGGCagcuugugaacGCCGGCG-CGCCcGUCGa -3'
miRNA:   3'- cauGCGCCCG-----------CGGCUGUaGUGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 8410 0.66 0.380798
Target:  5'- -cGCGUGGGCcgaGCaCGACcaggcuAUCGCCGCa- -3'
miRNA:   3'- caUGCGCCCG---CG-GCUG------UAGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 8380 0.69 0.259204
Target:  5'- -gGCGCcGGUGCUGACGgaCGCCGCaCGc -3'
miRNA:   3'- caUGCGcCCGCGGCUGUa-GUGGCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 8245 0.68 0.265779
Target:  5'- cUGC-CGaGCGCuCGGCGUCACCGCUc -3'
miRNA:   3'- cAUGcGCcCGCG-GCUGUAGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 7990 0.66 0.389554
Target:  5'- aUACGCgGGGCGCU--CGUCuCCaGCCGu -3'
miRNA:   3'- cAUGCG-CCCGCGGcuGUAGuGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 7296 0.71 0.18539
Target:  5'- -cGCuGUGGGUcgucgugucGCCGucCGUCGCCGCCGa -3'
miRNA:   3'- caUG-CGCCCG---------CGGCu-GUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 6959 0.67 0.331084
Target:  5'- cGUGCGCGGGCGCauCGAgCAUgaGCUGUg- -3'
miRNA:   3'- -CAUGCGCCCGCG--GCU-GUAg-UGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 6882 0.74 0.116867
Target:  5'- -cGCGCaGGCGCUGAucaaguacaugauCAUgGCCGCCGa -3'
miRNA:   3'- caUGCGcCCGCGGCU-------------GUAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 6458 0.68 0.300686
Target:  5'- aGUGCGCgaccugaaguacGGGCG-CGGCGUCGCggugucUGCCGa -3'
miRNA:   3'- -CAUGCG------------CCCGCgGCUGUAGUG------GCGGC- -5'
28069 3' -60.6 NC_005887.1 + 6401 0.7 0.216847
Target:  5'- cGUACGCGGaaGUCGACAaggCGCUgGCCGa -3'
miRNA:   3'- -CAUGCGCCcgCGGCUGUa--GUGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 6388 0.66 0.395762
Target:  5'- -aACGCGGggcgaagggcacgaGCGacugCGugAUCAUCGCCGu -3'
miRNA:   3'- caUGCGCC--------------CGCg---GCugUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 6318 0.68 0.286314
Target:  5'- uUGCGCcucgccGGCGCCGAgGUgaCGCUGCUGg -3'
miRNA:   3'- cAUGCGc-----CCGCGGCUgUA--GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 6176 0.67 0.315609
Target:  5'- -aGCGCcucgacccgaacGGGaagGUCGACAUCAUCGUCGa -3'
miRNA:   3'- caUGCG------------CCCg--CGGCUGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 6037 0.69 0.234227
Target:  5'- aGUGCGC-GGCGUCGAC--CGCCGCg- -3'
miRNA:   3'- -CAUGCGcCCGCGGCUGuaGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 4773 0.67 0.345483
Target:  5'- -aGCGCGGGaagcugacgccaGCCGGCGagGCCGUg- -3'
miRNA:   3'- caUGCGCCCg-----------CGGCUGUagUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 4624 0.67 0.308078
Target:  5'- --cCGC-GGCGCCGG--UgGCCGCCGg -3'
miRNA:   3'- cauGCGcCCGCGGCUguAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 4291 0.66 0.372174
Target:  5'- -cGCGCGaG-GUCGACAUCcUCGCCGa -3'
miRNA:   3'- caUGCGCcCgCGGCUGUAGuGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.