miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 6882 0.74 0.116867
Target:  5'- -cGCGCaGGCGCUGAucaaguacaugauCAUgGCCGCCGa -3'
miRNA:   3'- caUGCGcCCGCGGCU-------------GUAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 25514 0.76 0.077196
Target:  5'- -cGCgGCGGGUGgCGGCAuaaucgUCGCCGCCGa -3'
miRNA:   3'- caUG-CGCCCGCgGCUGU------AGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 18144 0.78 0.059861
Target:  5'- -aGCGCGGGcCGCCGACGUCgu-GCCGa -3'
miRNA:   3'- caUGCGCCC-GCGGCUGUAGuggCGGC- -5'
28069 3' -60.6 NC_005887.1 + 17965 0.81 0.033783
Target:  5'- aUGCGCGGGCucGCCGGCAUCgGCCGCa- -3'
miRNA:   3'- cAUGCGCCCG--CGGCUGUAG-UGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 15930 0.7 0.200583
Target:  5'- -cGCGCGGGCcggaaucgaugcGCCGGCcacgCGCCGCa- -3'
miRNA:   3'- caUGCGCCCG------------CGGCUGua--GUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 6401 0.7 0.216847
Target:  5'- cGUACGCGGaaGUCGACAaggCGCUgGCCGa -3'
miRNA:   3'- -CAUGCGCCcgCGGCUGUa--GUGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 14765 0.7 0.216847
Target:  5'- -aACGCGGGUuacgaccaccucGCCGACcagAUCAacCCGCUGg -3'
miRNA:   3'- caUGCGCCCG------------CGGCUG---UAGU--GGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 18549 0.68 0.286314
Target:  5'- gGUGgGCGgcGGCGCCGGCuUCGCgGgCGa -3'
miRNA:   3'- -CAUgCGC--CCGCGGCUGuAGUGgCgGC- -5'
28069 3' -60.6 NC_005887.1 + 14205 0.68 0.281413
Target:  5'- -gGCGCGgccucggacagggcGGCGCCGcgcuguucggcgcgGCAUCcgaucuuGCCGCCGg -3'
miRNA:   3'- caUGCGC--------------CCGCGGC--------------UGUAG-------UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 24954 0.68 0.272489
Target:  5'- -cGCGCGGGcCGCCuuGCG-CGCgGCCGc -3'
miRNA:   3'- caUGCGCCC-GCGGc-UGUaGUGgCGGC- -5'
28069 3' -60.6 NC_005887.1 + 16493 0.68 0.272489
Target:  5'- ---gGCGGGCuggucggcgauGUCGcaggccgaucGCGUCGCCGCCGg -3'
miRNA:   3'- caugCGCCCG-----------CGGC----------UGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 40141 0.68 0.265779
Target:  5'- gGUGCGCGcugcGCGCCG-CGcUCGCCGCg- -3'
miRNA:   3'- -CAUGCGCc---CGCGGCuGU-AGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 1588 0.68 0.265779
Target:  5'- gGUGgGUGGGUGgCGGCcUCgaACCGCCa -3'
miRNA:   3'- -CAUgCGCCCGCgGCUGuAG--UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 32826 0.69 0.252763
Target:  5'- ---aGCGGGCcgaCGugAUgGCCGCCGu -3'
miRNA:   3'- caugCGCCCGcg-GCugUAgUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 13760 0.69 0.252126
Target:  5'- -gGCGCGaGgacgauuuccagaGCGCCGugAagcaggUCACCGCCGc -3'
miRNA:   3'- caUGCGC-C-------------CGCGGCugU------AGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 14011 0.69 0.240276
Target:  5'- -cGCGCGccuccgcaacCGCCGGCG-CGCCGCCGg -3'
miRNA:   3'- caUGCGCcc--------GCGGCUGUaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 32741 0.7 0.222514
Target:  5'- -aGCGCGGcgcucgcgugcGCGCCGGCGcgCGCCaugcaGCCGg -3'
miRNA:   3'- caUGCGCC-----------CGCGGCUGUa-GUGG-----CGGC- -5'
28069 3' -60.6 NC_005887.1 + 19822 0.7 0.222514
Target:  5'- -aACGgGGGCGUCGACGacaCACUGgCGa -3'
miRNA:   3'- caUGCgCCCGCGGCUGUa--GUGGCgGC- -5'
28069 3' -60.6 NC_005887.1 + 39835 0.7 0.220801
Target:  5'- -cGCGaCGGGcCGCCGucGCAcaucaaucgaccgcUCACCGCUGa -3'
miRNA:   3'- caUGC-GCCC-GCGGC--UGU--------------AGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 13621 0.7 0.216847
Target:  5'- -aGCGCGGcGCGCggCGGCcgCACUcaGCCGa -3'
miRNA:   3'- caUGCGCC-CGCG--GCUGuaGUGG--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.