miRNA display CGI


Results 121 - 132 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 19570 0.67 0.308078
Target:  5'- ---aGCGGccGCGCCGGCGUCGa-GCCa -3'
miRNA:   3'- caugCGCC--CGCGGCUGUAGUggCGGc -5'
28069 3' -60.6 NC_005887.1 + 23622 0.67 0.320193
Target:  5'- cUGCGCGaucuucagcaagucGGCGCCGAUGUgcguguccuugccCugCGCCGc -3'
miRNA:   3'- cAUGCGC--------------CCGCGGCUGUA-------------GugGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 38480 0.67 0.323277
Target:  5'- cGUAUGcCGGGCuGCCGcCGUacaCAUCGUCGg -3'
miRNA:   3'- -CAUGC-GCCCG-CGGCuGUA---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 901 0.67 0.331084
Target:  5'- -cGCGCGGcGUGCCGAgCAgCGCauaGCCc -3'
miRNA:   3'- caUGCGCC-CGCGGCU-GUaGUGg--CGGc -5'
28069 3' -60.6 NC_005887.1 + 6959 0.67 0.331084
Target:  5'- cGUGCGCGGGCGCauCGAgCAUgaGCUGUg- -3'
miRNA:   3'- -CAUGCGCCCGCG--GCU-GUAg-UGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 17468 0.67 0.339028
Target:  5'- -gAC-CGaGCGCgCGGCAUCGgCCGCCGc -3'
miRNA:   3'- caUGcGCcCGCG-GCUGUAGU-GGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 9672 0.67 0.339028
Target:  5'- uGUACGCGGuuGCCGAagcgCGCaCGCgCGa -3'
miRNA:   3'- -CAUGCGCCcgCGGCUgua-GUG-GCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 11816 0.67 0.339028
Target:  5'- cUGCGUGGcGUcucgGCCGACG--GCCGCCu -3'
miRNA:   3'- cAUGCGCC-CG----CGGCUGUagUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 33498 0.67 0.339028
Target:  5'- -gACG-GGcGCGCCGGCGUUcacaaGCUGCCc -3'
miRNA:   3'- caUGCgCC-CGCGGCUGUAG-----UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 37286 0.67 0.339028
Target:  5'- gGUAUGCGGGCugaucuuCCGGCGcggcCAUUGCCGu -3'
miRNA:   3'- -CAUGCGCCCGc------GGCUGUa---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 1596 0.66 0.355329
Target:  5'- -cGCGCGGcGCGCCaACGgcgAUCGCCu -3'
miRNA:   3'- caUGCGCC-CGCGGcUGUag-UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 12075 0.66 0.407458
Target:  5'- cGUGCGCGGcacgaucgucGCGCCGgACggCAagCGCCu -3'
miRNA:   3'- -CAUGCGCC----------CGCGGC-UGuaGUg-GCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.