miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 11816 0.67 0.339028
Target:  5'- cUGCGUGGcGUcucgGCCGACG--GCCGCCu -3'
miRNA:   3'- cAUGCGCC-CG----CGGCUGUagUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 1596 0.66 0.355329
Target:  5'- -cGCGCGGcGCGCCaACGgcgAUCGCCu -3'
miRNA:   3'- caUGCGCC-CGCGGcUGUag-UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 27735 0.66 0.389554
Target:  5'- -aGCGCGcccucgacGGCGCCGACG--GCCGUa- -3'
miRNA:   3'- caUGCGC--------CCGCGGCUGUagUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 26220 0.66 0.406551
Target:  5'- gGUugGCGGggugguuGCGCgCGGCG-CAgCGCCa -3'
miRNA:   3'- -CAugCGCC-------CGCG-GCUGUaGUgGCGGc -5'
28069 3' -60.6 NC_005887.1 + 9903 0.68 0.298495
Target:  5'- -cGCGCaGuGGCugcgcaaccugaucGCCGccggccACAUCGCCGCCGg -3'
miRNA:   3'- caUGCG-C-CCG--------------CGGC------UGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 38480 0.67 0.323277
Target:  5'- cGUAUGcCGGGCuGCCGcCGUacaCAUCGUCGg -3'
miRNA:   3'- -CAUGC-GCCCG-CGGCuGUA---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 37768 0.66 0.355329
Target:  5'- cUGCGCGGccuGCGCCucGGCGgcuugCugCGCCu -3'
miRNA:   3'- cAUGCGCC---CGCGG--CUGUa----GugGCGGc -5'
28069 3' -60.6 NC_005887.1 + 25846 0.66 0.407458
Target:  5'- -gACGCGaucGGCcugCGACAUCGCCGaCCa -3'
miRNA:   3'- caUGCGC---CCGcg-GCUGUAGUGGC-GGc -5'
28069 3' -60.6 NC_005887.1 + 901 0.67 0.331084
Target:  5'- -cGCGCGGcGUGCCGAgCAgCGCauaGCCc -3'
miRNA:   3'- caUGCGCC-CGCGGCU-GUaGUGg--CGGc -5'
28069 3' -60.6 NC_005887.1 + 9060 0.66 0.407458
Target:  5'- cGUACGCGGauggaaguGCGCCGGCu--GCgGCgGg -3'
miRNA:   3'- -CAUGCGCC--------CGCGGCUGuagUGgCGgC- -5'
28069 3' -60.6 NC_005887.1 + 23406 0.66 0.355329
Target:  5'- cGUGCGUuauuGGcCGCCGACG--GCCGCUGc -3'
miRNA:   3'- -CAUGCGc---CC-GCGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 9672 0.67 0.339028
Target:  5'- uGUACGCGGuuGCCGAagcgCGCaCGCgCGa -3'
miRNA:   3'- -CAUGCGCCcgCGGCUgua-GUG-GCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 26797 0.66 0.380798
Target:  5'- -aGCGCGGucgcgcGCGCCGA-GUCGUCGCCc -3'
miRNA:   3'- caUGCGCC------CGCGGCUgUAGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 7990 0.66 0.389554
Target:  5'- aUACGCgGGGCGCU--CGUCuCCaGCCGu -3'
miRNA:   3'- cAUGCG-CCCGCGGcuGUAGuGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 17742 0.66 0.398442
Target:  5'- -cACGCGuGCgGCCGcaAgAUCAUCGCCGc -3'
miRNA:   3'- caUGCGCcCG-CGGC--UgUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 624 0.66 0.406551
Target:  5'- -cGCGcCGGGaucggauCGCCGccCGUCAUCGCCu -3'
miRNA:   3'- caUGC-GCCC-------GCGGCu-GUAGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 6318 0.68 0.286314
Target:  5'- uUGCGCcucgccGGCGCCGAgGUgaCGCUGCUGg -3'
miRNA:   3'- cAUGCGc-----CCGCGGCUgUA--GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 17325 0.68 0.293431
Target:  5'- cUGCGCuaccGGCugGCCGGCG--GCCGCCGg -3'
miRNA:   3'- cAUGCGc---CCG--CGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 21063 0.68 0.300686
Target:  5'- -aAUGUGGGCGaCGccagcagcGCAUaCGCCGCCGc -3'
miRNA:   3'- caUGCGCCCGCgGC--------UGUA-GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 23622 0.67 0.320193
Target:  5'- cUGCGCGaucuucagcaagucGGCGCCGAUGUgcguguccuugccCugCGCCGc -3'
miRNA:   3'- cAUGCGC--------------CCGCGGCUGUA-------------GugGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.