miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 9903 0.68 0.298495
Target:  5'- -cGCGCaGuGGCugcgcaaccugaucGCCGccggccACAUCGCCGCCGg -3'
miRNA:   3'- caUGCG-C-CCG--------------CGGC------UGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 23406 0.66 0.355329
Target:  5'- cGUGCGUuauuGGcCGCCGACG--GCCGCUGc -3'
miRNA:   3'- -CAUGCGc---CC-GCGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 26220 0.66 0.406551
Target:  5'- gGUugGCGGggugguuGCGCgCGGCG-CAgCGCCa -3'
miRNA:   3'- -CAugCGCC-------CGCG-GCUGUaGUgGCGGc -5'
28069 3' -60.6 NC_005887.1 + 2952 0.68 0.300686
Target:  5'- -aACGCGGucGCGaCC-ACGguugCGCCGCCGg -3'
miRNA:   3'- caUGCGCC--CGC-GGcUGUa---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 25846 0.66 0.407458
Target:  5'- -gACGCGaucGGCcugCGACAUCGCCGaCCa -3'
miRNA:   3'- caUGCGC---CCGcg-GCUGUAGUGGC-GGc -5'
28069 3' -60.6 NC_005887.1 + 18803 0.7 0.195402
Target:  5'- -gAUGCGGGCGgCGucaGCGUaCGCUGCCa -3'
miRNA:   3'- caUGCGCCCGCgGC---UGUA-GUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 27061 0.66 0.398442
Target:  5'- gGUAUGCGGcagucucguuCGCCGGCGgacgcUCGCCGCg- -3'
miRNA:   3'- -CAUGCGCCc---------GCGGCUGU-----AGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 31417 0.69 0.228307
Target:  5'- cUGCGCguaaucGGGCgugagcaggccgGCCGACGUCAUcugCGCCGg -3'
miRNA:   3'- cAUGCG------CCCG------------CGGCUGUAGUG---GCGGC- -5'
28069 3' -60.6 NC_005887.1 + 19072 0.69 0.234227
Target:  5'- -gGCGCGGGCuG-CGGCA--ACCGCCa -3'
miRNA:   3'- caUGCGCCCG-CgGCUGUagUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 19099 0.69 0.252763
Target:  5'- cUGCGCcuuuuGcGCGCCGAC--CGCCGCCGc -3'
miRNA:   3'- cAUGCGc----C-CGCGGCUGuaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 39453 0.68 0.265779
Target:  5'- cGUuCGCGGcG-GCCGACGUguCCGUCGu -3'
miRNA:   3'- -CAuGCGCC-CgCGGCUGUAguGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 1438 0.68 0.284205
Target:  5'- gGUGCGCGcgcgguagcccuucGGCgGCuCGuCGUCACCGUCGc -3'
miRNA:   3'- -CAUGCGC--------------CCG-CG-GCuGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 19206 0.68 0.292713
Target:  5'- -cACGgGGGUcgaggaucgucacGCCGuCAccUCACCGCCa -3'
miRNA:   3'- caUGCgCCCG-------------CGGCuGU--AGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 10050 0.67 0.308078
Target:  5'- --cUGCGGcGCGCCGGCuggcccgacgAUCGCC-CCGu -3'
miRNA:   3'- cauGCGCC-CGCGGCUG----------UAGUGGcGGC- -5'
28069 3' -60.6 NC_005887.1 + 38480 0.67 0.323277
Target:  5'- cGUAUGcCGGGCuGCCGcCGUacaCAUCGUCGg -3'
miRNA:   3'- -CAUGC-GCCCG-CGGCuGUA---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 9672 0.67 0.339028
Target:  5'- uGUACGCGGuuGCCGAagcgCGCaCGCgCGa -3'
miRNA:   3'- -CAUGCGCCcgCGGCUgua-GUG-GCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 37286 0.67 0.339028
Target:  5'- gGUAUGCGGGCugaucuuCCGGCGcggcCAUUGCCGu -3'
miRNA:   3'- -CAUGCGCCCGc------GGCUGUa---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 2212 0.66 0.363684
Target:  5'- -aGCGCGGcGCGCa-GCGcgCACCGCaCGc -3'
miRNA:   3'- caUGCGCC-CGCGgcUGUa-GUGGCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 14153 0.66 0.389554
Target:  5'- -gACGCGcGGCGCUGAUgcggCGCacaGCCc -3'
miRNA:   3'- caUGCGC-CCGCGGCUGua--GUGg--CGGc -5'
28069 3' -60.6 NC_005887.1 + 21472 0.66 0.398442
Target:  5'- -cACGCcGGCGCCacuauCAUUcagGCCGCCa -3'
miRNA:   3'- caUGCGcCCGCGGcu---GUAG---UGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.