miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 11400 1.09 0.000251
Target:  5'- cGUACGCGGGCGCCGACAUCACCGCCGa -3'
miRNA:   3'- -CAUGCGCCCGCGGCUGUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 25045 0.71 0.180556
Target:  5'- -cACGCGGuGCGCCGaaccgGCGUUugCGCgCGc -3'
miRNA:   3'- caUGCGCC-CGCGGC-----UGUAGugGCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 901 0.67 0.331084
Target:  5'- -cGCGCGGcGUGCCGAgCAgCGCauaGCCc -3'
miRNA:   3'- caUGCGCC-CGCGGCU-GUaGUGg--CGGc -5'
28069 3' -60.6 NC_005887.1 + 38480 0.67 0.323277
Target:  5'- cGUAUGcCGGGCuGCCGcCGUacaCAUCGUCGg -3'
miRNA:   3'- -CAUGC-GCCCG-CGGCuGUA---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 19570 0.67 0.308078
Target:  5'- ---aGCGGccGCGCCGGCGUCGa-GCCa -3'
miRNA:   3'- caugCGCC--CGCGGCUGUAGUggCGGc -5'
28069 3' -60.6 NC_005887.1 + 10050 0.67 0.308078
Target:  5'- --cUGCGGcGCGCCGGCuggcccgacgAUCGCC-CCGu -3'
miRNA:   3'- cauGCGCC-CGCGGCUG----------UAGUGGcGGC- -5'
28069 3' -60.6 NC_005887.1 + 2952 0.68 0.300686
Target:  5'- -aACGCGGucGCGaCC-ACGguugCGCCGCCGg -3'
miRNA:   3'- caUGCGCC--CGC-GGcUGUa---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 36914 0.71 0.171222
Target:  5'- aGUGCcaGCGGGCG-CGugGUCG-CGCCGg -3'
miRNA:   3'- -CAUG--CGCCCGCgGCugUAGUgGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 35075 0.7 0.19489
Target:  5'- ---aGCGGGCggccgggGCCGAUgucgcgGUCGCUGCCGa -3'
miRNA:   3'- caugCGCCCG-------CGGCUG------UAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 14563 0.7 0.200583
Target:  5'- cUGCGUcGGCGCCGuCGUCAuggcgcucuaccUCGCCGg -3'
miRNA:   3'- cAUGCGcCCGCGGCuGUAGU------------GGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 34156 0.69 0.252763
Target:  5'- gGUGCGCGGGUa--GACAUCgaACUGCCc -3'
miRNA:   3'- -CAUGCGCCCGcggCUGUAG--UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 15017 0.69 0.240276
Target:  5'- cUGCGCGuGGCGCaguCGACGUgGCCGgaCGa -3'
miRNA:   3'- cAUGCGC-CCGCG---GCUGUAgUGGCg-GC- -5'
28069 3' -60.6 NC_005887.1 + 40763 0.68 0.293431
Target:  5'- cGUugGC--GCGCCG-CG-CGCCGCCGa -3'
miRNA:   3'- -CAugCGccCGCGGCuGUaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 41285 0.66 0.398442
Target:  5'- cUGCGCacGGGCGCgCuGCu--GCCGCCGg -3'
miRNA:   3'- cAUGCG--CCCGCG-GcUGuagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 16458 0.66 0.389554
Target:  5'- -cGCGCGGGCaugcGCuCGACcgCGCgGCa- -3'
miRNA:   3'- caUGCGCCCG----CG-GCUGuaGUGgCGgc -5'
28069 3' -60.6 NC_005887.1 + 32299 0.66 0.389554
Target:  5'- --uCGuCGGGCcaGCCGGCG-CGCCGCa- -3'
miRNA:   3'- cauGC-GCCCG--CGGCUGUaGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 28191 0.66 0.407458
Target:  5'- -cGgGCuGuGCGCCG-CAUCAgCGCCGc -3'
miRNA:   3'- caUgCGcC-CGCGGCuGUAGUgGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 16310 0.68 0.286314
Target:  5'- -cACGCaGGaCGCCGGCcuguucgagGUCGCCGCg- -3'
miRNA:   3'- caUGCGcCC-GCGGCUG---------UAGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 18549 0.68 0.286314
Target:  5'- gGUGgGCGgcGGCGCCGGCuUCGCgGgCGa -3'
miRNA:   3'- -CAUgCGC--CCGCGGCUGuAGUGgCgGC- -5'
28069 3' -60.6 NC_005887.1 + 6401 0.7 0.216847
Target:  5'- cGUACGCGGaaGUCGACAaggCGCUgGCCGa -3'
miRNA:   3'- -CAUGCGCCcgCGGCUGUa--GUGG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.