Results 81 - 100 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28069 | 3' | -60.6 | NC_005887.1 | + | 10371 | 0.72 | 0.158029 |
Target: 5'- cGUACaaCGGcGUGCCGACGUCgacuAUCGCCGg -3' miRNA: 3'- -CAUGc-GCC-CGCGGCUGUAG----UGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 23550 | 0.72 | 0.145761 |
Target: 5'- cGUACGCuGaCGCCGcccGCAUCGCCgGCCGg -3' miRNA: 3'- -CAUGCGcCcGCGGC---UGUAGUGG-CGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 25514 | 0.76 | 0.077196 |
Target: 5'- -cGCgGCGGGUGgCGGCAuaaucgUCGCCGCCGa -3' miRNA: 3'- caUG-CGCCCGCgGCUGU------AGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 36631 | 0.66 | 0.380798 |
Target: 5'- -cGCGCGccuucuccuGcGCGUCGugGUCugCGCCc -3' miRNA: 3'- caUGCGC---------C-CGCGGCugUAGugGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 25006 | 0.66 | 0.380798 |
Target: 5'- -aGCGUcagcucGCGCCGGCG--GCCGCCGg -3' miRNA: 3'- caUGCGcc----CGCGGCUGUagUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 13399 | 0.66 | 0.380798 |
Target: 5'- -gGCGCGGcggaCGUCGGCGgcaaGCCGCUGc -3' miRNA: 3'- caUGCGCCc---GCGGCUGUag--UGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 40763 | 0.68 | 0.293431 |
Target: 5'- cGUugGC--GCGCCG-CG-CGCCGCCGa -3' miRNA: 3'- -CAugCGccCGCGGCuGUaGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 16310 | 0.68 | 0.286314 |
Target: 5'- -cACGCaGGaCGCCGGCcuguucgagGUCGCCGCg- -3' miRNA: 3'- caUGCGcCC-GCGGCUG---------UAGUGGCGgc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 18549 | 0.68 | 0.286314 |
Target: 5'- gGUGgGCGgcGGCGCCGGCuUCGCgGgCGa -3' miRNA: 3'- -CAUgCGC--CCGCGGCUGuAGUGgCgGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 28191 | 0.66 | 0.407458 |
Target: 5'- -cGgGCuGuGCGCCG-CAUCAgCGCCGc -3' miRNA: 3'- caUgCGcC-CGCGGCuGUAGUgGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 24954 | 0.68 | 0.272489 |
Target: 5'- -cGCGCGGGcCGCCuuGCG-CGCgGCCGc -3' miRNA: 3'- caUGCGCCC-GCGGc-UGUaGUGgCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 16493 | 0.68 | 0.272489 |
Target: 5'- ---gGCGGGCuggucggcgauGUCGcaggccgaucGCGUCGCCGCCGg -3' miRNA: 3'- caugCGCCCG-----------CGGC----------UGUAGUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 40141 | 0.68 | 0.265779 |
Target: 5'- gGUGCGCGcugcGCGCCG-CGcUCGCCGCg- -3' miRNA: 3'- -CAUGCGCc---CGCGGCuGU-AGUGGCGgc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 1588 | 0.68 | 0.265779 |
Target: 5'- gGUGgGUGGGUGgCGGCcUCgaACCGCCa -3' miRNA: 3'- -CAUgCGCCCGCgGCUGuAG--UGGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 9099 | 0.66 | 0.407458 |
Target: 5'- -aGCGCGGGCaCCGGC---GCCGUUa -3' miRNA: 3'- caUGCGCCCGcGGCUGuagUGGCGGc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 41285 | 0.66 | 0.398442 |
Target: 5'- cUGCGCacGGGCGCgCuGCu--GCCGCCGg -3' miRNA: 3'- cAUGCG--CCCGCG-GcUGuagUGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 14205 | 0.68 | 0.281413 |
Target: 5'- -gGCGCGgccucggacagggcGGCGCCGcgcuguucggcgcgGCAUCcgaucuuGCCGCCGg -3' miRNA: 3'- caUGCGC--------------CCGCGGC--------------UGUAG-------UGGCGGC- -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 16458 | 0.66 | 0.389554 |
Target: 5'- -cGCGCGGGCaugcGCuCGACcgCGCgGCa- -3' miRNA: 3'- caUGCGCCCG----CG-GCUGuaGUGgCGgc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 32299 | 0.66 | 0.389554 |
Target: 5'- --uCGuCGGGCcaGCCGGCG-CGCCGCa- -3' miRNA: 3'- cauGC-GCCCG--CGGCUGUaGUGGCGgc -5' |
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28069 | 3' | -60.6 | NC_005887.1 | + | 36981 | 0.66 | 0.388673 |
Target: 5'- -cGCGCGGGUcgagcucGCCGGCGagcacgCGCagGCCGu -3' miRNA: 3'- caUGCGCCCG-------CGGCUGUa-----GUGg-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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