miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 27805 0.66 0.380798
Target:  5'- -cGCGCGacaUGCCGAUcgacgCGCCGCCGa -3'
miRNA:   3'- caUGCGCcc-GCGGCUGua---GUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 31509 0.66 0.380798
Target:  5'- -cGCGCGcGGCGCgGAUgaacgcaguuGUCGCuuCGCCa -3'
miRNA:   3'- caUGCGC-CCGCGgCUG----------UAGUG--GCGGc -5'
28069 3' -60.6 NC_005887.1 + 8410 0.66 0.380798
Target:  5'- -cGCGUGGGCcgaGCaCGACcaggcuAUCGCCGCa- -3'
miRNA:   3'- caUGCGCCCG---CG-GCUG------UAGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 13399 0.66 0.380798
Target:  5'- -gGCGCGGcggaCGUCGGCGgcaaGCCGCUGc -3'
miRNA:   3'- caUGCGCCc---GCGGCUGUag--UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 36631 0.66 0.380798
Target:  5'- -cGCGCGccuucuccuGcGCGUCGugGUCugCGCCc -3'
miRNA:   3'- caUGCGC---------C-CGCGGCugUAGugGCGGc -5'
28069 3' -60.6 NC_005887.1 + 25006 0.66 0.380798
Target:  5'- -aGCGUcagcucGCGCCGGCG--GCCGCCGg -3'
miRNA:   3'- caUGCGcc----CGCGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 8844 0.66 0.372174
Target:  5'- --uCGCGGGCagcuugugaacGCCGGCG-CGCCcGUCGa -3'
miRNA:   3'- cauGCGCCCG-----------CGGCUGUaGUGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 4291 0.66 0.372174
Target:  5'- -cGCGCGaG-GUCGACAUCcUCGCCGa -3'
miRNA:   3'- caUGCGCcCgCGGCUGUAGuGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 2212 0.66 0.363684
Target:  5'- -aGCGCGGcGCGCa-GCGcgCACCGCaCGc -3'
miRNA:   3'- caUGCGCC-CGCGgcUGUa-GUGGCG-GC- -5'
28069 3' -60.6 NC_005887.1 + 40176 0.66 0.363684
Target:  5'- cUGCGCGacGGCa-CGAagggaAUCGCCGCCGg -3'
miRNA:   3'- cAUGCGC--CCGcgGCUg----UAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 29018 0.66 0.362842
Target:  5'- cUGCGCGGcgagauccgcgauGCgGCCGGCGUUGCCgaacgccugGCCGa -3'
miRNA:   3'- cAUGCGCC-------------CG-CGGCUGUAGUGG---------CGGC- -5'
28069 3' -60.6 NC_005887.1 + 2885 0.66 0.355329
Target:  5'- -cGCGCaGGCGaCGACGgacacgUCGgCCGCCGc -3'
miRNA:   3'- caUGCGcCCGCgGCUGU------AGU-GGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 1596 0.66 0.355329
Target:  5'- -cGCGCGGcGCGCCaACGgcgAUCGCCu -3'
miRNA:   3'- caUGCGCC-CGCGGcUGUag-UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 23406 0.66 0.355329
Target:  5'- cGUGCGUuauuGGcCGCCGACG--GCCGCUGc -3'
miRNA:   3'- -CAUGCGc---CC-GCGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 37768 0.66 0.355329
Target:  5'- cUGCGCGGccuGCGCCucGGCGgcuugCugCGCCu -3'
miRNA:   3'- cAUGCGCC---CGCGG--CUGUa----GugGCGGc -5'
28069 3' -60.6 NC_005887.1 + 10095 0.66 0.355329
Target:  5'- uGUGgGCGGcccGCGCCGACG--GCCaGCUGa -3'
miRNA:   3'- -CAUgCGCC---CGCGGCUGUagUGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 34340 0.67 0.34711
Target:  5'- uGUGC-CGuGGCGCCGGC--CACgGCUGg -3'
miRNA:   3'- -CAUGcGC-CCGCGGCUGuaGUGgCGGC- -5'
28069 3' -60.6 NC_005887.1 + 4773 0.67 0.345483
Target:  5'- -aGCGCGGGaagcugacgccaGCCGGCGagGCCGUg- -3'
miRNA:   3'- caUGCGCCCg-----------CGGCUGUagUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 27233 0.67 0.339028
Target:  5'- -gGCGCaucgcGGCGCaacuGCAUCGCgCGCCGg -3'
miRNA:   3'- caUGCGc----CCGCGgc--UGUAGUG-GCGGC- -5'
28069 3' -60.6 NC_005887.1 + 19189 0.67 0.339028
Target:  5'- -gGCGCGGGCGUggaGACAggCGgCGCgGu -3'
miRNA:   3'- caUGCGCCCGCGg--CUGUa-GUgGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.