miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 5' -55.9 NC_005887.1 + 18191 0.66 0.584596
Target:  5'- aGgAAGGCGAguucGCCGUGCUG-AACc- -3'
miRNA:   3'- gUgUUCCGCUa---CGGCGCGACcUUGau -5'
28069 5' -55.9 NC_005887.1 + 40080 0.66 0.584596
Target:  5'- gGCGGGGCGggGCUGCacaucuacguGCugUGGGACg- -3'
miRNA:   3'- gUGUUCCGCuaCGGCG----------CG--ACCUUGau -5'
28069 5' -55.9 NC_005887.1 + 6096 0.66 0.573348
Target:  5'- gACgAAGGCacgGCCGCGCacGAGCUGg -3'
miRNA:   3'- gUG-UUCCGcuaCGGCGCGacCUUGAU- -5'
28069 5' -55.9 NC_005887.1 + 17658 0.66 0.562151
Target:  5'- uGCAGGGCacGAUccucGCCGCGCUuGGcGACg- -3'
miRNA:   3'- gUGUUCCG--CUA----CGGCGCGA-CC-UUGau -5'
28069 5' -55.9 NC_005887.1 + 6551 0.66 0.562151
Target:  5'- uCACGGGGCuGUcGCCGCGCUacAACUc -3'
miRNA:   3'- -GUGUUCCGcUA-CGGCGCGAccUUGAu -5'
28069 5' -55.9 NC_005887.1 + 17819 0.66 0.555461
Target:  5'- --gAAGGUGcgGCCGCGCgUgaugcuuaccgucgaGGAACUGg -3'
miRNA:   3'- gugUUCCGCuaCGGCGCG-A---------------CCUUGAU- -5'
28069 5' -55.9 NC_005887.1 + 16180 0.66 0.53334
Target:  5'- -uCGAGGCGAaccugcgcgaagagGCCGCGCUGcGACc- -3'
miRNA:   3'- guGUUCCGCUa-------------CGGCGCGACcUUGau -5'
28069 5' -55.9 NC_005887.1 + 13726 0.67 0.507225
Target:  5'- gGCAAGccgaacaucgucGCGAUGCCGUacgGCUGGcGCg- -3'
miRNA:   3'- gUGUUC------------CGCUACGGCG---CGACCuUGau -5'
28069 5' -55.9 NC_005887.1 + 15765 0.67 0.496504
Target:  5'- gUACAAGGcCGcgGCCGCGaaGGcGCa- -3'
miRNA:   3'- -GUGUUCC-GCuaCGGCGCgaCCuUGau -5'
28069 5' -55.9 NC_005887.1 + 26418 0.67 0.496504
Target:  5'- aGCu-GGCG--GCCGCGCgGGAACg- -3'
miRNA:   3'- gUGuuCCGCuaCGGCGCGaCCUUGau -5'
28069 5' -55.9 NC_005887.1 + 12870 0.67 0.485886
Target:  5'- gCACGAccguGGCaGGUGCCGUGC-GcGAGCUGa -3'
miRNA:   3'- -GUGUU----CCG-CUACGGCGCGaC-CUUGAU- -5'
28069 5' -55.9 NC_005887.1 + 31124 0.67 0.475377
Target:  5'- aGCAGGGCGAgcuUGCCGgGCaGGccguGCg- -3'
miRNA:   3'- gUGUUCCGCU---ACGGCgCGaCCu---UGau -5'
28069 5' -55.9 NC_005887.1 + 12648 0.68 0.444558
Target:  5'- aCGCGAcGGCGAgugGCUGCGCgUGcAGCUGc -3'
miRNA:   3'- -GUGUU-CCGCUa--CGGCGCG-ACcUUGAU- -5'
28069 5' -55.9 NC_005887.1 + 10018 0.72 0.244359
Target:  5'- cCACAucacGCGcgGCCGCGCUGGcACg- -3'
miRNA:   3'- -GUGUuc--CGCuaCGGCGCGACCuUGau -5'
28069 5' -55.9 NC_005887.1 + 1500 0.73 0.219349
Target:  5'- uCGCGcGGCGcgGCCGUGC-GGAACa- -3'
miRNA:   3'- -GUGUuCCGCuaCGGCGCGaCCUUGau -5'
28069 5' -55.9 NC_005887.1 + 7120 0.73 0.202054
Target:  5'- aACGAGGCGggGCgGCGCUGcGGCg- -3'
miRNA:   3'- gUGUUCCGCuaCGgCGCGACcUUGau -5'
28069 5' -55.9 NC_005887.1 + 14217 0.75 0.148451
Target:  5'- gACAGGGCGgcGCCGCGCUGuucGGCg- -3'
miRNA:   3'- gUGUUCCGCuaCGGCGCGACc--UUGau -5'
28069 5' -55.9 NC_005887.1 + 30448 0.77 0.114586
Target:  5'- gGCGGGGCauguUGCCGgGCUGGAACa- -3'
miRNA:   3'- gUGUUCCGcu--ACGGCgCGACCUUGau -5'
28069 5' -55.9 NC_005887.1 + 11437 1.06 0.000817
Target:  5'- gCACAAGGCGAUGCCGCGCUGGAACUAc -3'
miRNA:   3'- -GUGUUCCGCUACGGCGCGACCUUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.