miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2807 5' -57.3 NC_001491.2 + 6559 0.66 0.870401
Target:  5'- cUGCGaGCACAgCGcCGCCCUgGCGCUCa -3'
miRNA:   3'- cAUGUgCGUGU-GC-GCGGGG-UGUGAGc -5'
2807 5' -57.3 NC_001491.2 + 42018 0.66 0.862995
Target:  5'- uGUACGCgGCAUACucuGCGCCaaCC-CACUUGg -3'
miRNA:   3'- -CAUGUG-CGUGUG---CGCGG--GGuGUGAGC- -5'
2807 5' -57.3 NC_001491.2 + 60165 0.66 0.862995
Target:  5'- uUGC-CGUuguguccuuGCACGCGCCUgGC-CUCGa -3'
miRNA:   3'- cAUGuGCG---------UGUGCGCGGGgUGuGAGC- -5'
2807 5' -57.3 NC_001491.2 + 105128 0.66 0.855384
Target:  5'- cUACACGUuuccAUugGCGCaaaCCACGCacgCGg -3'
miRNA:   3'- cAUGUGCG----UGugCGCGg--GGUGUGa--GC- -5'
2807 5' -57.3 NC_001491.2 + 104221 0.66 0.847574
Target:  5'- -cGCACGCGCucucuaacacagACGCGCCUgGaaucaGCUUGg -3'
miRNA:   3'- caUGUGCGUG------------UGCGCGGGgUg----UGAGC- -5'
2807 5' -57.3 NC_001491.2 + 39879 0.66 0.847574
Target:  5'- -aGCGCGUcCGCGUGUguaauaaaaaacUCCACACUCu -3'
miRNA:   3'- caUGUGCGuGUGCGCG------------GGGUGUGAGc -5'
2807 5' -57.3 NC_001491.2 + 65841 0.66 0.839572
Target:  5'- aUGCACGCAa--GCGCCgCCAUgACUgGg -3'
miRNA:   3'- cAUGUGCGUgugCGCGG-GGUG-UGAgC- -5'
2807 5' -57.3 NC_001491.2 + 121556 0.66 0.839572
Target:  5'- -gGCACGCGCACgGCGUCgaUGCGCUgGc -3'
miRNA:   3'- caUGUGCGUGUG-CGCGGg-GUGUGAgC- -5'
2807 5' -57.3 NC_001491.2 + 82626 0.67 0.831385
Target:  5'- cUGCAC-CGCGCGCGCUaccagCCGCGCg-- -3'
miRNA:   3'- cAUGUGcGUGUGCGCGG-----GGUGUGagc -5'
2807 5' -57.3 NC_001491.2 + 137373 0.67 0.831385
Target:  5'- aGUAaGCGC-CACGCGCCgCCGC-CUg- -3'
miRNA:   3'- -CAUgUGCGuGUGCGCGG-GGUGuGAgc -5'
2807 5' -57.3 NC_001491.2 + 2567 0.67 0.814485
Target:  5'- -aGCGC-CAgACGCGCCCCucCAC-CGu -3'
miRNA:   3'- caUGUGcGUgUGCGCGGGGu-GUGaGC- -5'
2807 5' -57.3 NC_001491.2 + 140186 0.67 0.805787
Target:  5'- -cGCgGCGCACGCGgucuCGCUgCCGCGCUCc -3'
miRNA:   3'- caUG-UGCGUGUGC----GCGG-GGUGUGAGc -5'
2807 5' -57.3 NC_001491.2 + 62440 0.67 0.787935
Target:  5'- gGUAgACGgAC-CGCGCCuCCACcucCUCGa -3'
miRNA:   3'- -CAUgUGCgUGuGCGCGG-GGUGu--GAGC- -5'
2807 5' -57.3 NC_001491.2 + 146571 0.67 0.787935
Target:  5'- -aGCACGCAgGCGU-CCCCGaGCUCc -3'
miRNA:   3'- caUGUGCGUgUGCGcGGGGUgUGAGc -5'
2807 5' -57.3 NC_001491.2 + 29389 0.68 0.778798
Target:  5'- aGUGCGCGCgccuGCAgGCGCUguCUACcCUCGa -3'
miRNA:   3'- -CAUGUGCG----UGUgCGCGG--GGUGuGAGC- -5'
2807 5' -57.3 NC_001491.2 + 141651 0.68 0.769532
Target:  5'- cGUGCGCGUGCcCGCGaggcuCCCCgGCgGCUCGg -3'
miRNA:   3'- -CAUGUGCGUGuGCGC-----GGGG-UG-UGAGC- -5'
2807 5' -57.3 NC_001491.2 + 115529 0.68 0.769532
Target:  5'- ---gAgGC-CugGCGCCCgGCGCUCa -3'
miRNA:   3'- caugUgCGuGugCGCGGGgUGUGAGc -5'
2807 5' -57.3 NC_001491.2 + 85446 0.68 0.7449
Target:  5'- -aACACGCGCAugagagucggacgcgUGUGCCCCGCGggCa -3'
miRNA:   3'- caUGUGCGUGU---------------GCGCGGGGUGUgaGc -5'
2807 5' -57.3 NC_001491.2 + 123373 0.68 0.741049
Target:  5'- --cCGCGCACACGCGCgCUCGUACaUCu -3'
miRNA:   3'- cauGUGCGUGUGCGCG-GGGUGUG-AGc -5'
2807 5' -57.3 NC_001491.2 + 34497 0.69 0.721577
Target:  5'- uUACugGCGugcucggcCACGCGCgCCCugGCcCGg -3'
miRNA:   3'- cAUGugCGU--------GUGCGCG-GGGugUGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.