miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2807 5' -57.3 NC_001491.2 + 141400 1.09 0.00231
Target:  5'- gGUACACGCACACGCGCCCCACACUCGa -3'
miRNA:   3'- -CAUGUGCGUGUGCGCGGGGUGUGAGC- -5'
2807 5' -57.3 NC_001491.2 + 81417 0.82 0.153082
Target:  5'- -cACGCGUACACGgGCCCgGCGCUCc -3'
miRNA:   3'- caUGUGCGUGUGCgCGGGgUGUGAGc -5'
2807 5' -57.3 NC_001491.2 + 38663 0.75 0.361338
Target:  5'- uGUGCGCGuCGCGCGCGCCUCccuggugcGCGCUUu -3'
miRNA:   3'- -CAUGUGC-GUGUGCGCGGGG--------UGUGAGc -5'
2807 5' -57.3 NC_001491.2 + 60890 0.74 0.41084
Target:  5'- uGUuCGCGCACGCaGCGCCCCAaACUgGc -3'
miRNA:   3'- -CAuGUGCGUGUG-CGCGGGGUgUGAgC- -5'
2807 5' -57.3 NC_001491.2 + 123308 0.73 0.446091
Target:  5'- aGUACGCGCagaagaGCAUGCGgCCgCugACUCGg -3'
miRNA:   3'- -CAUGUGCG------UGUGCGCgGG-GugUGAGC- -5'
2807 5' -57.3 NC_001491.2 + 125547 0.72 0.511561
Target:  5'- -gGCgGCGCuCGCGCGCuCCCGCgcccGCUCGg -3'
miRNA:   3'- caUG-UGCGuGUGCGCG-GGGUG----UGAGC- -5'
2807 5' -57.3 NC_001491.2 + 23265 0.71 0.600838
Target:  5'- -aGCGCGCaacggGCGCGCGCCgCCugGCg-- -3'
miRNA:   3'- caUGUGCG-----UGUGCGCGG-GGugUGagc -5'
2807 5' -57.3 NC_001491.2 + 143066 0.71 0.610957
Target:  5'- aUACACaCACGCGCcgGCCCCACcccaUCGa -3'
miRNA:   3'- cAUGUGcGUGUGCG--CGGGGUGug--AGC- -5'
2807 5' -57.3 NC_001491.2 + 60835 0.69 0.691828
Target:  5'- cGUACAUGCGCcUGCGCUgcgaagcauCCGCAgUCGc -3'
miRNA:   3'- -CAUGUGCGUGuGCGCGG---------GGUGUgAGC- -5'
2807 5' -57.3 NC_001491.2 + 114761 0.69 0.711724
Target:  5'- ---aGCGCACcCGCGuuCCCCugGCUCc -3'
miRNA:   3'- caugUGCGUGuGCGC--GGGGugUGAGc -5'
2807 5' -57.3 NC_001491.2 + 34497 0.69 0.721577
Target:  5'- uUACugGCGugcucggcCACGCGCgCCCugGCcCGg -3'
miRNA:   3'- cAUGugCGU--------GUGCGCG-GGGugUGaGC- -5'
2807 5' -57.3 NC_001491.2 + 123373 0.68 0.741049
Target:  5'- --cCGCGCACACGCGCgCUCGUACaUCu -3'
miRNA:   3'- cauGUGCGUGUGCGCG-GGGUGUG-AGc -5'
2807 5' -57.3 NC_001491.2 + 85446 0.68 0.7449
Target:  5'- -aACACGCGCAugagagucggacgcgUGUGCCCCGCGggCa -3'
miRNA:   3'- caUGUGCGUGU---------------GCGCGGGGUGUgaGc -5'
2807 5' -57.3 NC_001491.2 + 115529 0.68 0.769532
Target:  5'- ---gAgGC-CugGCGCCCgGCGCUCa -3'
miRNA:   3'- caugUgCGuGugCGCGGGgUGUGAGc -5'
2807 5' -57.3 NC_001491.2 + 141651 0.68 0.769532
Target:  5'- cGUGCGCGUGCcCGCGaggcuCCCCgGCgGCUCGg -3'
miRNA:   3'- -CAUGUGCGUGuGCGC-----GGGG-UG-UGAGC- -5'
2807 5' -57.3 NC_001491.2 + 29389 0.68 0.778798
Target:  5'- aGUGCGCGCgccuGCAgGCGCUguCUACcCUCGa -3'
miRNA:   3'- -CAUGUGCG----UGUgCGCGG--GGUGuGAGC- -5'
2807 5' -57.3 NC_001491.2 + 62440 0.67 0.787935
Target:  5'- gGUAgACGgAC-CGCGCCuCCACcucCUCGa -3'
miRNA:   3'- -CAUgUGCgUGuGCGCGG-GGUGu--GAGC- -5'
2807 5' -57.3 NC_001491.2 + 146571 0.67 0.787935
Target:  5'- -aGCACGCAgGCGU-CCCCGaGCUCc -3'
miRNA:   3'- caUGUGCGUgUGCGcGGGGUgUGAGc -5'
2807 5' -57.3 NC_001491.2 + 140186 0.67 0.805787
Target:  5'- -cGCgGCGCACGCGgucuCGCUgCCGCGCUCc -3'
miRNA:   3'- caUG-UGCGUGUGC----GCGG-GGUGUGAGc -5'
2807 5' -57.3 NC_001491.2 + 2567 0.67 0.814485
Target:  5'- -aGCGC-CAgACGCGCCCCucCAC-CGu -3'
miRNA:   3'- caUGUGcGUgUGCGCGGGGu-GUGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.