Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 2807 | 5' | -57.3 | NC_001491.2 | + | 137373 | 0.67 | 0.831385 |
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Target: 5'- aGUAaGCGC-CACGCGCCgCCGC-CUg- -3' miRNA: 3'- -CAUgUGCGuGUGCGCGG-GGUGuGAgc -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 82626 | 0.67 | 0.831385 |
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Target: 5'- cUGCAC-CGCGCGCGCUaccagCCGCGCg-- -3' miRNA: 3'- cAUGUGcGUGUGCGCGG-----GGUGUGagc -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 65841 | 0.66 | 0.839572 |
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Target: 5'- aUGCACGCAa--GCGCCgCCAUgACUgGg -3' miRNA: 3'- cAUGUGCGUgugCGCGG-GGUG-UGAgC- -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 121556 | 0.66 | 0.839572 |
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Target: 5'- -gGCACGCGCACgGCGUCgaUGCGCUgGc -3' miRNA: 3'- caUGUGCGUGUG-CGCGGg-GUGUGAgC- -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 104221 | 0.66 | 0.847574 |
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Target: 5'- -cGCACGCGCucucuaacacagACGCGCCUgGaaucaGCUUGg -3' miRNA: 3'- caUGUGCGUG------------UGCGCGGGgUg----UGAGC- -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 39879 | 0.66 | 0.847574 |
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Target: 5'- -aGCGCGUcCGCGUGUguaauaaaaaacUCCACACUCu -3' miRNA: 3'- caUGUGCGuGUGCGCG------------GGGUGUGAGc -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 105128 | 0.66 | 0.855384 |
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Target: 5'- cUACACGUuuccAUugGCGCaaaCCACGCacgCGg -3' miRNA: 3'- cAUGUGCG----UGugCGCGg--GGUGUGa--GC- -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 60165 | 0.66 | 0.862995 |
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Target: 5'- uUGC-CGUuguguccuuGCACGCGCCUgGC-CUCGa -3' miRNA: 3'- cAUGuGCG---------UGUGCGCGGGgUGuGAGC- -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 42018 | 0.66 | 0.862995 |
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Target: 5'- uGUACGCgGCAUACucuGCGCCaaCC-CACUUGg -3' miRNA: 3'- -CAUGUG-CGUGUG---CGCGG--GGuGUGAGC- -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 6559 | 0.66 | 0.870401 |
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Target: 5'- cUGCGaGCACAgCGcCGCCCUgGCGCUCa -3' miRNA: 3'- cAUGUgCGUGU-GC-GCGGGG-UGUGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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