Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2807 | 5' | -57.3 | NC_001491.2 | + | 60835 | 0.69 | 0.691828 |
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Target: 5'- cGUACAUGCGCcUGCGCUgcgaagcauCCGCAgUCGc -3' miRNA: 3'- -CAUGUGCGUGuGCGCGG---------GGUGUgAGC- -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 60165 | 0.66 | 0.862995 |
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Target: 5'- uUGC-CGUuguguccuuGCACGCGCCUgGC-CUCGa -3' miRNA: 3'- cAUGuGCG---------UGUGCGCGGGgUGuGAGC- -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 42018 | 0.66 | 0.862995 |
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Target: 5'- uGUACGCgGCAUACucuGCGCCaaCC-CACUUGg -3' miRNA: 3'- -CAUGUG-CGUGUG---CGCGG--GGuGUGAGC- -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 39879 | 0.66 | 0.847574 |
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Target: 5'- -aGCGCGUcCGCGUGUguaauaaaaaacUCCACACUCu -3' miRNA: 3'- caUGUGCGuGUGCGCG------------GGGUGUGAGc -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 38663 | 0.75 | 0.361338 |
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Target: 5'- uGUGCGCGuCGCGCGCGCCUCccuggugcGCGCUUu -3' miRNA: 3'- -CAUGUGC-GUGUGCGCGGGG--------UGUGAGc -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 34497 | 0.69 | 0.721577 |
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Target: 5'- uUACugGCGugcucggcCACGCGCgCCCugGCcCGg -3' miRNA: 3'- cAUGugCGU--------GUGCGCG-GGGugUGaGC- -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 29389 | 0.68 | 0.778798 |
|
Target: 5'- aGUGCGCGCgccuGCAgGCGCUguCUACcCUCGa -3' miRNA: 3'- -CAUGUGCG----UGUgCGCGG--GGUGuGAGC- -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 23265 | 0.71 | 0.600838 |
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Target: 5'- -aGCGCGCaacggGCGCGCGCCgCCugGCg-- -3' miRNA: 3'- caUGUGCG-----UGUGCGCGG-GGugUGagc -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 6559 | 0.66 | 0.870401 |
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Target: 5'- cUGCGaGCACAgCGcCGCCCUgGCGCUCa -3' miRNA: 3'- cAUGUgCGUGU-GC-GCGGGG-UGUGAGc -5' |
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| 2807 | 5' | -57.3 | NC_001491.2 | + | 2567 | 0.67 | 0.814485 |
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Target: 5'- -aGCGC-CAgACGCGCCCCucCAC-CGu -3' miRNA: 3'- caUGUGcGUgUGCGCGGGGu-GUGaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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