miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28070 3' -58.4 NC_005887.1 + 9349 0.66 0.529441
Target:  5'- ---aCGGCAgCGUGucGCGcaUGACCACCg -3'
miRNA:   3'- gccaGCCGU-GCACccUGC--ACUGGUGG- -5'
28070 3' -58.4 NC_005887.1 + 15872 0.66 0.529441
Target:  5'- gCGGcCGGCAugccCGUGcu-CGUGGCCuACCa -3'
miRNA:   3'- -GCCaGCCGU----GCACccuGCACUGG-UGG- -5'
28070 3' -58.4 NC_005887.1 + 10229 0.66 0.529441
Target:  5'- cCGGaCGGCGCGUcugaugaccuguGGGugauCGUccGCCGCCa -3'
miRNA:   3'- -GCCaGCCGUGCA------------CCCu---GCAc-UGGUGG- -5'
28070 3' -58.4 NC_005887.1 + 33831 0.66 0.518039
Target:  5'- aGGUCGGCGCGgcgaucgaacgcaUGcaGGGCGUacgaGCCugCg -3'
miRNA:   3'- gCCAGCCGUGC-------------AC--CCUGCAc---UGGugG- -5'
28070 3' -58.4 NC_005887.1 + 26994 0.66 0.488473
Target:  5'- uCGGgCGuCACGUGGaACGUGGCCGa- -3'
miRNA:   3'- -GCCaGCcGUGCACCcUGCACUGGUgg -5'
28070 3' -58.4 NC_005887.1 + 41778 0.67 0.468552
Target:  5'- aGGUCGuGCcgACGUGGGucGCGUucauGCCaACCa -3'
miRNA:   3'- gCCAGC-CG--UGCACCC--UGCAc---UGG-UGG- -5'
28070 3' -58.4 NC_005887.1 + 1790 0.67 0.458748
Target:  5'- gCGcGUCGGC-CGcuacccgaaGGACGUG-CCGCCg -3'
miRNA:   3'- -GC-CAGCCGuGCac-------CCUGCACuGGUGG- -5'
28070 3' -58.4 NC_005887.1 + 32870 0.67 0.452919
Target:  5'- gGGUCGGC-CG-GGucguucgucgccaccGuaccCGUGACCACCu -3'
miRNA:   3'- gCCAGCCGuGCaCC---------------Cu---GCACUGGUGG- -5'
28070 3' -58.4 NC_005887.1 + 17788 0.68 0.420675
Target:  5'- cCGGUCguGGCuguCGUcgcaGGGGC-UGAUCGCCg -3'
miRNA:   3'- -GCCAG--CCGu--GCA----CCCUGcACUGGUGG- -5'
28070 3' -58.4 NC_005887.1 + 13394 0.68 0.402368
Target:  5'- aGGcCGGCGCG-GcGGACGUcGGCgGCa -3'
miRNA:   3'- gCCaGCCGUGCaC-CCUGCA-CUGgUGg -5'
28070 3' -58.4 NC_005887.1 + 17689 0.69 0.367309
Target:  5'- -cGUCGGCACGaUGuu-CGUGACgGCCg -3'
miRNA:   3'- gcCAGCCGUGC-ACccuGCACUGgUGG- -5'
28070 3' -58.4 NC_005887.1 + 1583 0.69 0.350585
Target:  5'- gGGcCGGUggGUGGGugGcGGCCucgaACCg -3'
miRNA:   3'- gCCaGCCGugCACCCugCaCUGG----UGG- -5'
28070 3' -58.4 NC_005887.1 + 6180 0.7 0.326529
Target:  5'- cCGGUCGGCACG-GuGACGc-GCCGCg -3'
miRNA:   3'- -GCCAGCCGUGCaCcCUGCacUGGUGg -5'
28070 3' -58.4 NC_005887.1 + 12075 0.71 0.268462
Target:  5'- aGGUCGGCACGUcgcucggucaGGucaccGACGUGcugGCCGCg -3'
miRNA:   3'- gCCAGCCGUGCA----------CC-----CUGCAC---UGGUGg -5'
28070 3' -58.4 NC_005887.1 + 17154 0.71 0.255312
Target:  5'- uGGUCGGCgaagaucgcgagGCGUGGGAgcgcgcgaaCGcGGCCGCa -3'
miRNA:   3'- gCCAGCCG------------UGCACCCU---------GCaCUGGUGg -5'
28070 3' -58.4 NC_005887.1 + 38643 0.72 0.212863
Target:  5'- gCGGUCGGCGCGcGGcucgacGGCGUgguagaaGAUCGCCg -3'
miRNA:   3'- -GCCAGCCGUGCaCC------CUGCA-------CUGGUGG- -5'
28070 3' -58.4 NC_005887.1 + 12440 0.73 0.202581
Target:  5'- aGGcccgCGGCAUGUGGGAgugggcCGUGAagaaaCGCCg -3'
miRNA:   3'- gCCa---GCCGUGCACCCU------GCACUg----GUGG- -5'
28070 3' -58.4 NC_005887.1 + 37489 0.73 0.187225
Target:  5'- gCGGaUCGaucgugcgcuGCACGgGGGACGUGAUCACg -3'
miRNA:   3'- -GCC-AGC----------CGUGCaCCCUGCACUGGUGg -5'
28070 3' -58.4 NC_005887.1 + 26009 0.74 0.172903
Target:  5'- aCGGgCGGCGuCG-GGGGCGaGGCUACCg -3'
miRNA:   3'- -GCCaGCCGU-GCaCCCUGCaCUGGUGG- -5'
28070 3' -58.4 NC_005887.1 + 21036 0.76 0.118284
Target:  5'- gCGGUCGGCGCgGUGGG-CGUGcCCGu- -3'
miRNA:   3'- -GCCAGCCGUG-CACCCuGCACuGGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.