Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28070 | 5' | -59.9 | NC_005887.1 | + | 19503 | 0.8 | 0.035281 |
Target: 5'- gAUGCCGG-CGAGCaUCGGCGcAGGCGAc -3' miRNA: 3'- -UACGGCCaGCUCG-AGCUGC-UCCGCUa -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 26777 | 0.66 | 0.374815 |
Target: 5'- -gGCCgGGUCGAGCgagaucgugcagUCGGCGAGcGCc-- -3' miRNA: 3'- uaCGG-CCAGCUCG------------AGCUGCUC-CGcua -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 40418 | 0.66 | 0.373938 |
Target: 5'- cGUGCCGGUCGAaCUCGAgcUGAucaaaucGGCGc- -3' miRNA: 3'- -UACGGCCAGCUcGAGCU--GCU-------CCGCua -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 7608 | 0.66 | 0.366106 |
Target: 5'- -cGCCGGUUGA--UCGAUGGgcGGCGAc -3' miRNA: 3'- uaCGGCCAGCUcgAGCUGCU--CCGCUa -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 34945 | 0.67 | 0.332687 |
Target: 5'- -cGCCGGcuUCGAaCUCGGCG-GGCGu- -3' miRNA: 3'- uaCGGCC--AGCUcGAGCUGCuCCGCua -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 33547 | 0.67 | 0.32469 |
Target: 5'- cUGCUucuGGUCGGGU---GCGAGGCGAUc -3' miRNA: 3'- uACGG---CCAGCUCGagcUGCUCCGCUA- -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 16973 | 0.67 | 0.301562 |
Target: 5'- aAUGUCGG-CGAGCUCGACuacGGCu-- -3' miRNA: 3'- -UACGGCCaGCUCGAGCUGcu-CCGcua -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 28471 | 0.67 | 0.29932 |
Target: 5'- uUGCCGGgcCGcuucAGCUCGACGAaguagacgcgcgccGGCGGg -3' miRNA: 3'- uACGGCCa-GC----UCGAGCUGCU--------------CCGCUa -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 17149 | 0.68 | 0.272731 |
Target: 5'- gGUGCUGGUCG-GCgaagaUCG-CGAGGCGu- -3' miRNA: 3'- -UACGGCCAGCuCG-----AGCuGCUCCGCua -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 33717 | 0.68 | 0.259164 |
Target: 5'- -cGgCGGUCGAucuGCUCGAuCGcGGCGAg -3' miRNA: 3'- uaCgGCCAGCU---CGAGCU-GCuCCGCUa -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 5893 | 0.69 | 0.227659 |
Target: 5'- -cGaCCGGaacgUCGAGCUCGGuCGccAGGCGAUg -3' miRNA: 3'- uaC-GGCC----AGCUCGAGCU-GC--UCCGCUA- -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 40467 | 0.75 | 0.086741 |
Target: 5'- aAUGCCGGcgucgaCGAGCUCGAuuaCGAGGCGu- -3' miRNA: 3'- -UACGGCCa-----GCUCGAGCU---GCUCCGCua -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 41044 | 0.73 | 0.121807 |
Target: 5'- gGUGCaGGUCGAGCUCGA-GAacauGGCGAa -3' miRNA: 3'- -UACGgCCAGCUCGAGCUgCU----CCGCUa -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 7731 | 0.71 | 0.160665 |
Target: 5'- cAUGCCGGguaCGAGCgcgaaaaagGGCGAGGUGAUc -3' miRNA: 3'- -UACGGCCa--GCUCGag-------CUGCUCCGCUA- -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 23009 | 0.71 | 0.179131 |
Target: 5'- -cGCCGGUCGc-UUCuGCGAGGCGGUg -3' miRNA: 3'- uaCGGCCAGCucGAGcUGCUCCGCUA- -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 36983 | 0.7 | 0.204842 |
Target: 5'- -cGCgGGUCGAGCUCG-Cc-GGCGAg -3' miRNA: 3'- uaCGgCCAGCUCGAGCuGcuCCGCUa -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 22580 | 0.69 | 0.227659 |
Target: 5'- gAUGCUGGUCGGGCUCGcaauCGuGuGCGu- -3' miRNA: 3'- -UACGGCCAGCUCGAGCu---GCuC-CGCua -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 40789 | 0.69 | 0.227659 |
Target: 5'- -cGgCGGUCGAgGUUCGugGcGGCGAc -3' miRNA: 3'- uaCgGCCAGCU-CGAGCugCuCCGCUa -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 11062 | 1.03 | 0.000616 |
Target: 5'- gAUGCCGGUCGAGCUCGACGAGGCGAUc -3' miRNA: 3'- -UACGGCCAGCUCGAGCUGCUCCGCUA- -5' |
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28070 | 5' | -59.9 | NC_005887.1 | + | 40723 | 0.67 | 0.340007 |
Target: 5'- cGUGCCGuccUCGAGCUCGAaUGAcagguagugcguuGGCGGUu -3' miRNA: 3'- -UACGGCc--AGCUCGAGCU-GCU-------------CCGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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