miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28071 5' -56.4 NC_005887.1 + 32793 0.66 0.588784
Target:  5'- -aGGAuCGGC-GCGCGCCgcuucACGGgcACg -3'
miRNA:   3'- acCCU-GCUGaCGCGCGGa----UGCCuuUG- -5'
28071 5' -56.4 NC_005887.1 + 18925 0.66 0.582139
Target:  5'- gGcGGGCGGCUGCgacgagcugaucgacGCGCugCUGCGGcuGCc -3'
miRNA:   3'- aC-CCUGCUGACG---------------CGCG--GAUGCCuuUG- -5'
28071 5' -56.4 NC_005887.1 + 27355 0.66 0.555733
Target:  5'- cGGGcggcacgccuGCGGcCUGCGCGgCCUGCGcGGcguaGGCg -3'
miRNA:   3'- aCCC----------UGCU-GACGCGC-GGAUGC-CU----UUG- -5'
28071 5' -56.4 NC_005887.1 + 34699 0.66 0.54483
Target:  5'- aGcGGGCGGCcgucGuCGCGCUUGCGGu-GCg -3'
miRNA:   3'- aC-CCUGCUGa---C-GCGCGGAUGCCuuUG- -5'
28071 5' -56.4 NC_005887.1 + 1590 0.67 0.481126
Target:  5'- cGGcGGCGcGCgGCGCGCCaACGGcGAUc -3'
miRNA:   3'- aCC-CUGC-UGaCGCGCGGaUGCCuUUG- -5'
28071 5' -56.4 NC_005887.1 + 4681 0.67 0.478033
Target:  5'- cGGGGCGGCUGCugaacugaaagaucGaaaCGCCgggaGGAAGCa -3'
miRNA:   3'- aCCCUGCUGACG--------------C---GCGGaug-CCUUUG- -5'
28071 5' -56.4 NC_005887.1 + 23972 0.68 0.460692
Target:  5'- cGGGuucGCGAgCgccgGCGCGCCgucuacGCGGAAGu -3'
miRNA:   3'- aCCC---UGCU-Ga---CGCGCGGa-----UGCCUUUg -5'
28071 5' -56.4 NC_005887.1 + 16773 0.68 0.440726
Target:  5'- gUGGGAcuuCGACgauggugGCaGCGCacGCGGAAGCa -3'
miRNA:   3'- -ACCCU---GCUGa------CG-CGCGgaUGCCUUUG- -5'
28071 5' -56.4 NC_005887.1 + 41939 0.68 0.430929
Target:  5'- aGcGGGCGGCgcgGCGCGUCUucGCGGc-GCu -3'
miRNA:   3'- aC-CCUGCUGa--CGCGCGGA--UGCCuuUG- -5'
28071 5' -56.4 NC_005887.1 + 28326 0.69 0.402324
Target:  5'- cUGcGcCGGCgGCGCGCCggcgguUGCGGAGGCg -3'
miRNA:   3'- -ACcCuGCUGaCGCGCGG------AUGCCUUUG- -5'
28071 5' -56.4 NC_005887.1 + 18015 0.7 0.356558
Target:  5'- aUGGGACcGCcGCGCGCUUAcgcgcgcCGGAcuGACg -3'
miRNA:   3'- -ACCCUGcUGaCGCGCGGAU-------GCCU--UUG- -5'
28071 5' -56.4 NC_005887.1 + 4415 0.7 0.331397
Target:  5'- cGGGcUGAUUcaacaacGCGCGCCUGCuGggGCa -3'
miRNA:   3'- aCCCuGCUGA-------CGCGCGGAUGcCuuUG- -5'
28071 5' -56.4 NC_005887.1 + 38403 0.72 0.270804
Target:  5'- cGGGuCGACgagcuucUGCGCGCC-GCGGAu-- -3'
miRNA:   3'- aCCCuGCUG-------ACGCGCGGaUGCCUuug -5'
28071 5' -56.4 NC_005887.1 + 35204 0.75 0.17232
Target:  5'- cGGGGCGAUucguUGCGCagcagcuugucgGCCUGCGuGggGCu -3'
miRNA:   3'- aCCCUGCUG----ACGCG------------CGGAUGC-CuuUG- -5'
28071 5' -56.4 NC_005887.1 + 10794 1.1 0.000438
Target:  5'- gUGGGACGACUGCGCGCCUACGGAAACg -3'
miRNA:   3'- -ACCCUGCUGACGCGCGGAUGCCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.