miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28072 3' -54.9 NC_005887.1 + 16351 0.67 0.592427
Target:  5'- cCCGACGCCgcccgugaagcugUACCGCguCGCCGAagugUCGAa -3'
miRNA:   3'- -GGCUGCGG-------------GUGGUG--GUGGCUaa--AGUU- -5'
28072 3' -54.9 NC_005887.1 + 40398 0.67 0.58239
Target:  5'- gUGAUGCCCGgCACgGCCGAcgugccggUCGAa -3'
miRNA:   3'- gGCUGCGGGUgGUGgUGGCUaa------AGUU- -5'
28072 3' -54.9 NC_005887.1 + 17332 0.67 0.571279
Target:  5'- aCCGGCugGCCgGCgGCCGCCGGcg-CGAg -3'
miRNA:   3'- -GGCUG--CGGgUGgUGGUGGCUaaaGUU- -5'
28072 3' -54.9 NC_005887.1 + 30738 0.68 0.560219
Target:  5'- gCGcACGCUCugCACCugCGug-UCGAg -3'
miRNA:   3'- gGC-UGCGGGugGUGGugGCuaaAGUU- -5'
28072 3' -54.9 NC_005887.1 + 19110 0.68 0.560219
Target:  5'- gCG-CGCCgACCGCCGCCGc--UCGc -3'
miRNA:   3'- gGCuGCGGgUGGUGGUGGCuaaAGUu -5'
28072 3' -54.9 NC_005887.1 + 41291 0.68 0.54922
Target:  5'- aCgGGCGCgCUGCUGCCGCCGGg--CAAg -3'
miRNA:   3'- -GgCUGCG-GGUGGUGGUGGCUaaaGUU- -5'
28072 3' -54.9 NC_005887.1 + 30564 0.68 0.5372
Target:  5'- aCCGACG-CCGCCgagcagcgaggacGCCGCCGAgaUCc- -3'
miRNA:   3'- -GGCUGCgGGUGG-------------UGGUGGCUaaAGuu -5'
28072 3' -54.9 NC_005887.1 + 32310 0.68 0.527433
Target:  5'- gCCGGCGCgCCgcagugcguaggACCACaCGCCGAUgccggCGAa -3'
miRNA:   3'- -GGCUGCG-GG------------UGGUG-GUGGCUAaa---GUU- -5'
28072 3' -54.9 NC_005887.1 + 16150 0.68 0.51666
Target:  5'- gCCGGC-CaCCGCCGCC-CCGuUUUCAu -3'
miRNA:   3'- -GGCUGcG-GGUGGUGGuGGCuAAAGUu -5'
28072 3' -54.9 NC_005887.1 + 34235 0.68 0.51666
Target:  5'- uCCGGCGUCCcgaucuuuCCGCUGuCUGAUUUCAGc -3'
miRNA:   3'- -GGCUGCGGGu-------GGUGGU-GGCUAAAGUU- -5'
28072 3' -54.9 NC_005887.1 + 19245 0.68 0.512376
Target:  5'- uUCGAUGCuCCACCuguaccgcuugguGCCGCCGAcgcaagaaaccgagUUUCAGc -3'
miRNA:   3'- -GGCUGCG-GGUGG-------------UGGUGGCU--------------AAAGUU- -5'
28072 3' -54.9 NC_005887.1 + 24558 0.69 0.505976
Target:  5'- gCCgGGCGCCCAUgAUCGCCGucagcUUCAc -3'
miRNA:   3'- -GG-CUGCGGGUGgUGGUGGCua---AAGUu -5'
28072 3' -54.9 NC_005887.1 + 21648 0.69 0.50279
Target:  5'- cCCGACGCCgACCAaucugacgggcgugUCGCUGAcgUCGGg -3'
miRNA:   3'- -GGCUGCGGgUGGU--------------GGUGGCUaaAGUU- -5'
28072 3' -54.9 NC_005887.1 + 36950 0.69 0.495388
Target:  5'- gCGcCGCCCGCCGguUCACCGGUcgCGc -3'
miRNA:   3'- gGCuGCGGGUGGU--GGUGGCUAaaGUu -5'
28072 3' -54.9 NC_005887.1 + 22785 0.69 0.484902
Target:  5'- cUCGACGCCggCGCgGCCGCUGuugUUCAc -3'
miRNA:   3'- -GGCUGCGG--GUGgUGGUGGCua-AAGUu -5'
28072 3' -54.9 NC_005887.1 + 6791 0.69 0.464256
Target:  5'- cCCGGCGCUCGCCGCaCAugUCGAg--CAGa -3'
miRNA:   3'- -GGCUGCGGGUGGUG-GU--GGCUaaaGUU- -5'
28072 3' -54.9 NC_005887.1 + 25019 0.69 0.464256
Target:  5'- gCCGGCGgCCGCCGgCCAgCCGGUagcgCAGa -3'
miRNA:   3'- -GGCUGCgGGUGGU-GGU-GGCUAaa--GUU- -5'
28072 3' -54.9 NC_005887.1 + 11405 0.69 0.454107
Target:  5'- gCgGGCGCCgaCAUCACCGCCGAgcgCGc -3'
miRNA:   3'- -GgCUGCGG--GUGGUGGUGGCUaaaGUu -5'
28072 3' -54.9 NC_005887.1 + 39711 0.71 0.395891
Target:  5'- gCGAgUGCCCGCCGCCACC----UCAu -3'
miRNA:   3'- gGCU-GCGGGUGGUGGUGGcuaaAGUu -5'
28072 3' -54.9 NC_005887.1 + 37729 0.71 0.395891
Target:  5'- gCCGGCGgCCACCGgCGCCGcgg-CGAg -3'
miRNA:   3'- -GGCUGCgGGUGGUgGUGGCuaaaGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.