miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28072 5' -53.4 NC_005887.1 + 22091 0.66 0.799408
Target:  5'- cCGUCGggGCCcuucugUGGAAacugcugcCGGGuGCg -3'
miRNA:   3'- -GCAGCuuCGGcauaa-GCCUU--------GCCC-CG- -5'
28072 5' -53.4 NC_005887.1 + 10992 0.66 0.779467
Target:  5'- uCGUCGAGGauggCGUGgugcUCGGGuGCGGcGGUc -3'
miRNA:   3'- -GCAGCUUCg---GCAUa---AGCCU-UGCC-CCG- -5'
28072 5' -53.4 NC_005887.1 + 3962 0.66 0.769254
Target:  5'- uCGUCGAcccGCCGUugcUCGcGAACgaGGaGGCg -3'
miRNA:   3'- -GCAGCUu--CGGCAua-AGC-CUUG--CC-CCG- -5'
28072 5' -53.4 NC_005887.1 + 19121 0.67 0.748403
Target:  5'- uCGUCGAcaAGaUCG-AUUC-GAACGGGGUc -3'
miRNA:   3'- -GCAGCU--UC-GGCaUAAGcCUUGCCCCG- -5'
28072 5' -53.4 NC_005887.1 + 35024 0.67 0.716242
Target:  5'- uCGUCGccAGUCGUGUugUCGGcggcGACGGacGGCg -3'
miRNA:   3'- -GCAGCu-UCGGCAUA--AGCC----UUGCC--CCG- -5'
28072 5' -53.4 NC_005887.1 + 29495 0.67 0.715155
Target:  5'- uGUCGuAGCCGg---CGGccucgacGGCGGGcGCg -3'
miRNA:   3'- gCAGCuUCGGCauaaGCC-------UUGCCC-CG- -5'
28072 5' -53.4 NC_005887.1 + 21064 0.67 0.694353
Target:  5'- uCGUCGgcGCCGgug-UGGggUGGcguuGGCu -3'
miRNA:   3'- -GCAGCuuCGGCauaaGCCuuGCC----CCG- -5'
28072 5' -53.4 NC_005887.1 + 5598 0.68 0.672215
Target:  5'- uCGUCGAGGCCaagGgcUUCaaGGAUGcGGGCg -3'
miRNA:   3'- -GCAGCUUCGG---CauAAGc-CUUGC-CCCG- -5'
28072 5' -53.4 NC_005887.1 + 40065 0.68 0.64992
Target:  5'- cCGUucCGAucGuCCGg---CGGGGCGGGGCu -3'
miRNA:   3'- -GCA--GCUu-C-GGCauaaGCCUUGCCCCG- -5'
28072 5' -53.4 NC_005887.1 + 26166 0.69 0.627558
Target:  5'- uCGUCGA--UCGUGUcgcgcgcgaugaUCGGGuagaugaaaACGGGGCg -3'
miRNA:   3'- -GCAGCUucGGCAUA------------AGCCU---------UGCCCCG- -5'
28072 5' -53.4 NC_005887.1 + 17790 0.69 0.605212
Target:  5'- gGUCGuGGCUGUcgUCGca--GGGGCu -3'
miRNA:   3'- gCAGCuUCGGCAuaAGCcuugCCCCG- -5'
28072 5' -53.4 NC_005887.1 + 13904 0.69 0.604097
Target:  5'- gCGUCGGcauucguGGCaCGUAcgCGGugucGACGGGGUc -3'
miRNA:   3'- -GCAGCU-------UCG-GCAUaaGCC----UUGCCCCG- -5'
28072 5' -53.4 NC_005887.1 + 22948 0.72 0.445143
Target:  5'- cCGUCGGu-CCGUAUUCGGAgaGCGGauaGCg -3'
miRNA:   3'- -GCAGCUucGGCAUAAGCCU--UGCCc--CG- -5'
28072 5' -53.4 NC_005887.1 + 35089 0.73 0.400803
Target:  5'- -uUCGAAGUCGUcUUCGGGcgguugaauuucgagGgCGGGGCg -3'
miRNA:   3'- gcAGCUUCGGCAuAAGCCU---------------U-GCCCCG- -5'
28072 5' -53.4 NC_005887.1 + 35061 0.73 0.397082
Target:  5'- gGUCGcuGCCGUcgUCGG--CGGGcGCg -3'
miRNA:   3'- gCAGCuuCGGCAuaAGCCuuGCCC-CG- -5'
28072 5' -53.4 NC_005887.1 + 30414 0.79 0.171215
Target:  5'- aCGcCGAguucgcccaccaucaGGCCGacgUCGGGGCGGGGCa -3'
miRNA:   3'- -GCaGCU---------------UCGGCauaAGCCUUGCCCCG- -5'
28072 5' -53.4 NC_005887.1 + 10507 1.13 0.000711
Target:  5'- cCGUCGAAGCCGUAUUCGGAACGGGGCg -3'
miRNA:   3'- -GCAGCUUCGGCAUAAGCCUUGCCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.