miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28073 3' -63.8 NC_005887.1 + 797 0.66 0.257988
Target:  5'- gGCGCUGGCUGacuucgcguGCgCGcCGAgCGCCUc -3'
miRNA:   3'- gCGCGGCCGAC---------CGgGCuGCUaGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 9271 0.66 0.257988
Target:  5'- uGUGCaCGGCggucGGCaCGGCGA-CGCCg -3'
miRNA:   3'- gCGCG-GCCGa---CCGgGCUGCUaGCGGg -5'
28073 3' -63.8 NC_005887.1 + 25935 0.66 0.257988
Target:  5'- uCGCGCaccagauuuagaCGG-UGGCCCGGCaGA-CGCCg -3'
miRNA:   3'- -GCGCG------------GCCgACCGGGCUG-CUaGCGGg -5'
28073 3' -63.8 NC_005887.1 + 14986 0.66 0.257988
Target:  5'- gCGCagGCCGcGCaGGCCgcaGGCGugcCGCCCg -3'
miRNA:   3'- -GCG--CGGC-CGaCCGGg--CUGCua-GCGGG- -5'
28073 3' -63.8 NC_005887.1 + 10224 0.66 0.257988
Target:  5'- cCGCGCCGGaCggcGcGUCUGAUGAccugugggugaUCGUCCg -3'
miRNA:   3'- -GCGCGGCC-Ga--C-CGGGCUGCU-----------AGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 36295 0.67 0.251737
Target:  5'- uCGU-CCGGUUGGCCgaucugcgCGGCGGUCGaCgCCg -3'
miRNA:   3'- -GCGcGGCCGACCGG--------GCUGCUAGC-G-GG- -5'
28073 3' -63.8 NC_005887.1 + 22772 0.67 0.251737
Target:  5'- aCGUGCUcGUUGGCUCGACGccggcgCGgCCg -3'
miRNA:   3'- -GCGCGGcCGACCGGGCUGCua----GCgGG- -5'
28073 3' -63.8 NC_005887.1 + 41614 0.67 0.24561
Target:  5'- gGCgGCCGGCgcGGCCCGugAgGAUCuGCUg -3'
miRNA:   3'- gCG-CGGCCGa-CCGGGC--UgCUAG-CGGg -5'
28073 3' -63.8 NC_005887.1 + 30941 0.67 0.24561
Target:  5'- gCGCGCuCGGCggugaugucgGcGCCCGcguACGugaggaacuUCGCCCa -3'
miRNA:   3'- -GCGCG-GCCGa---------C-CGGGC---UGCu--------AGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 33897 0.67 0.24561
Target:  5'- uGCGCCGGgc-GCUCGAUcgcguugacgcgGAUCGCUCg -3'
miRNA:   3'- gCGCGGCCgacCGGGCUG------------CUAGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 26210 0.67 0.241994
Target:  5'- gCGCGCCGGUgguuggcggggugguUGcGCgCGGCGcagCGCCa -3'
miRNA:   3'- -GCGCGGCCG---------------AC-CGgGCUGCua-GCGGg -5'
28073 3' -63.8 NC_005887.1 + 29199 0.67 0.241994
Target:  5'- gCGCGCgCGGCaagcgacgagacgaGGCCCGGCa--CGCUCg -3'
miRNA:   3'- -GCGCG-GCCGa-------------CCGGGCUGcuaGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 748 0.67 0.239608
Target:  5'- cCGCGCCGGCcgccgcaccUGGgCCGcCGcUgGCCg -3'
miRNA:   3'- -GCGCGGCCG---------ACCgGGCuGCuAgCGGg -5'
28073 3' -63.8 NC_005887.1 + 39393 0.67 0.239608
Target:  5'- aGuCGCCGGCgaggaUGGUCgCGGCGGU-GCCg -3'
miRNA:   3'- gC-GCGGCCG-----ACCGG-GCUGCUAgCGGg -5'
28073 3' -63.8 NC_005887.1 + 29792 0.67 0.239608
Target:  5'- gCGCauGCCGGC-GGCCguCGACGccaCGUCCu -3'
miRNA:   3'- -GCG--CGGCCGaCCGG--GCUGCua-GCGGG- -5'
28073 3' -63.8 NC_005887.1 + 35576 0.67 0.237832
Target:  5'- aGCGCCGGgcacacggccUUGGCCUuGCaGAacuugcacugcuucUCGCCCg -3'
miRNA:   3'- gCGCGGCC----------GACCGGGcUG-CU--------------AGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 28969 0.67 0.233729
Target:  5'- cCGCGCCGGCcuucaGCgCGAgCGccAUCGCCg -3'
miRNA:   3'- -GCGCGGCCGac---CGgGCU-GC--UAGCGGg -5'
28073 3' -63.8 NC_005887.1 + 29451 0.67 0.233729
Target:  5'- gCGUGCUGGCUcGCCgUGcCGAUCaGCUCg -3'
miRNA:   3'- -GCGCGGCCGAcCGG-GCuGCUAG-CGGG- -5'
28073 3' -63.8 NC_005887.1 + 12284 0.67 0.233729
Target:  5'- uGCGCCaGCUcGGCaaggugauggagCUGGCGcUCGCCUa -3'
miRNA:   3'- gCGCGGcCGA-CCG------------GGCUGCuAGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 30262 0.67 0.233729
Target:  5'- gGCGCUuGCcguccGGCgCGACGAUCGUgCCg -3'
miRNA:   3'- gCGCGGcCGa----CCGgGCUGCUAGCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.