Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28073 | 5' | -53.4 | NC_005887.1 | + | 1288 | 0.7 | 0.519993 |
Target: 5'- gCGGAUCGUGUCCuucGCCAugUUcUCg -3' miRNA: 3'- gGCCUAGUACGGGca-CGGUugGAaAG- -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 1453 | 0.68 | 0.609178 |
Target: 5'- uCCGGAUCAUgugcgagcaggaGCCCGacGCCGACg---- -3' miRNA: 3'- -GGCCUAGUA------------CGGGCa-CGGUUGgaaag -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 6042 | 0.66 | 0.764788 |
Target: 5'- uCCGGGUgGUGCUgGUGgCAGCg---- -3' miRNA: 3'- -GGCCUAgUACGGgCACgGUUGgaaag -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 9836 | 0.66 | 0.754212 |
Target: 5'- gCCGG-UCA-GCgCG-GCCAACCUg-- -3' miRNA: 3'- -GGCCuAGUaCGgGCaCGGUUGGAaag -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 10089 | 1.12 | 0.000686 |
Target: 5'- aCCGGAUCAUGCCCGUGCCAACCUUUCu -3' miRNA: 3'- -GGCCUAGUACGGGCACGGUUGGAAAG- -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 10440 | 0.66 | 0.743503 |
Target: 5'- cCCGGAUCuugcagcagcAUGCCUGaccgGCUGGCCg--- -3' miRNA: 3'- -GGCCUAG----------UACGGGCa---CGGUUGGaaag -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 14136 | 0.66 | 0.743502 |
Target: 5'- aCCaGAUCgauGUGCCCGaGCCGACgg-UCu -3' miRNA: 3'- -GGcCUAG---UACGGGCaCGGUUGgaaAG- -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 15875 | 0.75 | 0.280345 |
Target: 5'- gCCGG--CAUGCCCGUGCUcguGGCCUa-- -3' miRNA: 3'- -GGCCuaGUACGGGCACGG---UUGGAaag -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 16122 | 0.67 | 0.699593 |
Target: 5'- gCGGAUCGgaCCCGUgcGCCAGCUg--- -3' miRNA: 3'- gGCCUAGUacGGGCA--CGGUUGGaaag -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 24920 | 0.66 | 0.754212 |
Target: 5'- gCCGGAUCG-GCaCCGuUGUCGAUCg--- -3' miRNA: 3'- -GGCCUAGUaCG-GGC-ACGGUUGGaaag -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 26812 | 0.68 | 0.62052 |
Target: 5'- gCCGaGUCGUcGCCCGUGaCgAACCUcgCg -3' miRNA: 3'- -GGCcUAGUA-CGGGCAC-GgUUGGAaaG- -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 28513 | 0.72 | 0.379017 |
Target: 5'- aCGGGgauuUCGUGCCCGUucGCCAACaCgcugUCg -3' miRNA: 3'- gGCCU----AGUACGGGCA--CGGUUG-Gaa--AG- -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 28837 | 0.76 | 0.23919 |
Target: 5'- gUGGcgcgCAUGCCCGUGCCGgcgACCUcgUCg -3' miRNA: 3'- gGCCua--GUACGGGCACGGU---UGGAa-AG- -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 31318 | 0.69 | 0.586569 |
Target: 5'- aCCGGugGUCAcGUCCcacGUGCCGACCgggccgUCg -3' miRNA: 3'- -GGCC--UAGUaCGGG---CACGGUUGGaa----AG- -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 32530 | 0.7 | 0.519993 |
Target: 5'- aCGGcauAUCcgGCCacguGUGCCAGgCUUUCa -3' miRNA: 3'- gGCC---UAGuaCGGg---CACGGUUgGAAAG- -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 33941 | 0.66 | 0.754212 |
Target: 5'- gCCuGGUCGUGCUCG-GCCcacgcGCCUUgUCg -3' miRNA: 3'- -GGcCUAGUACGGGCaCGGu----UGGAA-AG- -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 36171 | 0.68 | 0.631871 |
Target: 5'- gCGGcgCGU-CaCCGUGCCGACCg--- -3' miRNA: 3'- gGCCuaGUAcG-GGCACGGUUGGaaag -5' |
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28073 | 5' | -53.4 | NC_005887.1 | + | 41209 | 0.68 | 0.643223 |
Target: 5'- cCCGcGcgucGUCGUGCCCGUGaCCGAgCUc-- -3' miRNA: 3'- -GGC-C----UAGUACGGGCAC-GGUUgGAaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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