miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28074 3' -50.3 NC_005887.1 + 4475 0.67 0.847054
Target:  5'- gGCUGCcGCGaAGGUgcCGAaCgGCGCGCg -3'
miRNA:   3'- aUGAUGuUGC-UCUA--GCUaGgCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 13618 0.67 0.847054
Target:  5'- -cCUACAACGg---CGAUagCGCGCGCg -3'
miRNA:   3'- auGAUGUUGCucuaGCUAg-GCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 9594 0.67 0.847054
Target:  5'- gGCUGCAugGcg--CGcgCCGgCGCGCa -3'
miRNA:   3'- aUGAUGUugCucuaGCuaGGC-GUGCG- -5'
28074 3' -50.3 NC_005887.1 + 1418 0.67 0.847054
Target:  5'- cGCU-CGGCGuugccGAacUCGGUgCGCGCGCg -3'
miRNA:   3'- aUGAuGUUGCu----CU--AGCUAgGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 26496 0.67 0.828462
Target:  5'- cUGCUGCGcGCGGGcguuucccUCGAUCgCGcCGCGCa -3'
miRNA:   3'- -AUGAUGU-UGCUCu-------AGCUAG-GC-GUGCG- -5'
28074 3' -50.3 NC_005887.1 + 500 0.67 0.828462
Target:  5'- aGCUGuucguCGACGAGuaucugGUCGAUCUGaACGCg -3'
miRNA:   3'- aUGAU-----GUUGCUC------UAGCUAGGCgUGCG- -5'
28074 3' -50.3 NC_005887.1 + 1338 0.68 0.819791
Target:  5'- cACUACAagccgcaggGCGAGAcgcUCGAgcgcuacauccugucCCGCGCGUc -3'
miRNA:   3'- aUGAUGU---------UGCUCU---AGCUa--------------GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 38047 0.68 0.818816
Target:  5'- aGCUGgccggccuCGGCGAGGaugUCGAcCuCGCGCGCg -3'
miRNA:   3'- aUGAU--------GUUGCUCU---AGCUaG-GCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 3375 0.68 0.818816
Target:  5'- -cCUGCAGgGAG--UGGUgCGCACGCu -3'
miRNA:   3'- auGAUGUUgCUCuaGCUAgGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 40896 0.68 0.808953
Target:  5'- gACggugACGACGAGccgcCGAaggcuaCCGCGCGCg -3'
miRNA:   3'- aUGa---UGUUGCUCua--GCUa-----GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 27214 0.68 0.808953
Target:  5'- -cCUGCAugGGGucgGUCgGGUCCGUgACGCc -3'
miRNA:   3'- auGAUGUugCUC---UAG-CUAGGCG-UGCG- -5'
28074 3' -50.3 NC_005887.1 + 3194 0.68 0.798884
Target:  5'- cGCgcccggACAGCGAGAagGG-CCGCgaGCGCu -3'
miRNA:   3'- aUGa-----UGUUGCUCUagCUaGGCG--UGCG- -5'
28074 3' -50.3 NC_005887.1 + 13173 0.68 0.788622
Target:  5'- cGCgcagACAGCGGGAgCGGUCgaGCAgGCc -3'
miRNA:   3'- aUGa---UGUUGCUCUaGCUAGg-CGUgCG- -5'
28074 3' -50.3 NC_005887.1 + 34977 0.68 0.788622
Target:  5'- aGCUgaacGCGGCGuugucGUCGGUCUGCAgCGCg -3'
miRNA:   3'- aUGA----UGUUGCuc---UAGCUAGGCGU-GCG- -5'
28074 3' -50.3 NC_005887.1 + 41725 0.68 0.788622
Target:  5'- gACggGCGGCGAuc-CGAUCCcgGCGCGCg -3'
miRNA:   3'- aUGa-UGUUGCUcuaGCUAGG--CGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 26674 0.68 0.788622
Target:  5'- cGCgcgGCggUGAGcugGUCGAgcUCgGCGCGCa -3'
miRNA:   3'- aUGa--UGuuGCUC---UAGCU--AGgCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 29181 0.68 0.778179
Target:  5'- uUGCUGCGcuGCGAG---GAUCUGCGCGg -3'
miRNA:   3'- -AUGAUGU--UGCUCuagCUAGGCGUGCg -5'
28074 3' -50.3 NC_005887.1 + 17027 0.68 0.778179
Target:  5'- gUGCUugGCAACG-GAUCGGaugcgcagCgGCACGCu -3'
miRNA:   3'- -AUGA--UGUUGCuCUAGCUa-------GgCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 2197 0.68 0.773954
Target:  5'- aGCUcacacGCGGCGAGcgCGGcgcgcagcgcgcaCCGCACGCu -3'
miRNA:   3'- aUGA-----UGUUGCUCuaGCUa------------GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 23234 0.69 0.767568
Target:  5'- gACgGCAcGCGAGcggcggCGGUCgGCGCGCa -3'
miRNA:   3'- aUGaUGU-UGCUCua----GCUAGgCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.