miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28074 5' -60.6 NC_005887.1 + 12576 0.66 0.336799
Target:  5'- gCUGCGCGAcgcggcgauCCUcgcGAUCaGCuCGCCGGgCAa -3'
miRNA:   3'- -GACGCGUU---------GGA---CUAG-CG-GCGGCCgGU- -5'
28074 5' -60.6 NC_005887.1 + 39773 0.66 0.336799
Target:  5'- -cGCGU-ACCgc-UCGCCGCucaCGGCCAu -3'
miRNA:   3'- gaCGCGuUGGacuAGCGGCG---GCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 32741 0.66 0.336799
Target:  5'- -aGCGCGGCgCUcGcgUGCgCGCCGGCg- -3'
miRNA:   3'- gaCGCGUUG-GA-CuaGCG-GCGGCCGgu -5'
28074 5' -60.6 NC_005887.1 + 26401 0.66 0.336799
Target:  5'- uCUGCGgGuUCUGGUCgaGCUGgCGGCCGc -3'
miRNA:   3'- -GACGCgUuGGACUAG--CGGCgGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 14368 0.66 0.336799
Target:  5'- -cGgGC-ACCUGuucgaGUCGCCGCuCGGCg- -3'
miRNA:   3'- gaCgCGuUGGAC-----UAGCGGCG-GCCGgu -5'
28074 5' -60.6 NC_005887.1 + 5435 0.66 0.336799
Target:  5'- -gGCGCGACCa---CGCCGCCcGCUg -3'
miRNA:   3'- gaCGCGUUGGacuaGCGGCGGcCGGu -5'
28074 5' -60.6 NC_005887.1 + 31789 0.66 0.328801
Target:  5'- cCUGCG-AGCCagUGGUCuGCCGCCGcauCCAa -3'
miRNA:   3'- -GACGCgUUGG--ACUAG-CGGCGGCc--GGU- -5'
28074 5' -60.6 NC_005887.1 + 4773 0.66 0.328801
Target:  5'- -aGCGCGggaAgCUGA-CGCCaGCCGGCgAg -3'
miRNA:   3'- gaCGCGU---UgGACUaGCGG-CGGCCGgU- -5'
28074 5' -60.6 NC_005887.1 + 1556 0.67 0.320944
Target:  5'- -gGCGCGucGCCgccacGAaccUCGaCCGCCGGCUc -3'
miRNA:   3'- gaCGCGU--UGGa----CU---AGC-GGCGGCCGGu -5'
28074 5' -60.6 NC_005887.1 + 33727 0.67 0.320944
Target:  5'- uCUGCuCGAUCgcggcgagGAUCaGCgCGCCGGCCu -3'
miRNA:   3'- -GACGcGUUGGa-------CUAG-CG-GCGGCCGGu -5'
28074 5' -60.6 NC_005887.1 + 20855 0.67 0.316298
Target:  5'- cCUGCGCGguaacgguguuggcgGCCUGAaugauagUGgCGCCGGCg- -3'
miRNA:   3'- -GACGCGU---------------UGGACUa------GCgGCGGCCGgu -5'
28074 5' -60.6 NC_005887.1 + 25151 0.67 0.313228
Target:  5'- uUGCGCGGCgCaacAUUGCCGCgugCGGCCGc -3'
miRNA:   3'- gACGCGUUG-Gac-UAGCGGCG---GCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 13182 0.67 0.305654
Target:  5'- -aGCGgGAgC-GGUCgagcagGCCGCCGGCCGa -3'
miRNA:   3'- gaCGCgUUgGaCUAG------CGGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 17539 0.67 0.298221
Target:  5'- uUGCGCAggACaucGAgaagcCGCUGUCGGCCAg -3'
miRNA:   3'- gACGCGU--UGga-CUa----GCGGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 873 0.67 0.298221
Target:  5'- -cGCGUGGCCcg--CGCCGCCGGaCGa -3'
miRNA:   3'- gaCGCGUUGGacuaGCGGCGGCCgGU- -5'
28074 5' -60.6 NC_005887.1 + 1814 0.67 0.298221
Target:  5'- -aGCGCcaGACCgucGUCGCUGCCGcgcGCCGc -3'
miRNA:   3'- gaCGCG--UUGGac-UAGCGGCGGC---CGGU- -5'
28074 5' -60.6 NC_005887.1 + 24288 0.67 0.297485
Target:  5'- -gGCGUcGCCUuguucacGAUCGCCcaaucGUCGGCCGu -3'
miRNA:   3'- gaCGCGuUGGA-------CUAGCGG-----CGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 35910 0.67 0.297485
Target:  5'- -cGCGC-ACUUcGAUCucggccgGCCGuCCGGCCAc -3'
miRNA:   3'- gaCGCGuUGGA-CUAG-------CGGC-GGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 13293 0.67 0.296019
Target:  5'- -gGCGCugAACCaGAUCgGCCaggcguucggcaacGCCGGCCGc -3'
miRNA:   3'- gaCGCG--UUGGaCUAG-CGG--------------CGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 39398 0.67 0.290929
Target:  5'- -gGCGCAACCgUGGUCGCgacCGCguuCGGCa- -3'
miRNA:   3'- gaCGCGUUGG-ACUAGCG---GCG---GCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.