miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28075 3' -58.5 NC_005887.1 + 27540 0.67 0.42188
Target:  5'- uCAUGgGCGGCGCUccaucauGGUGuGCaGCACGc -3'
miRNA:   3'- -GUGCgCGCUGUGG-------CCACuCGaCGUGU- -5'
28075 3' -58.5 NC_005887.1 + 29306 0.66 0.458867
Target:  5'- gUACGCgGCGACGCUGGccguguggaucugcUcGAGCUGCuuCAc -3'
miRNA:   3'- -GUGCG-CGCUGUGGCC--------------A-CUCGACGu-GU- -5'
28075 3' -58.5 NC_005887.1 + 29657 0.69 0.288384
Target:  5'- uCACGCGCGGCGCgaGGUagcacAGCUGgCGCu -3'
miRNA:   3'- -GUGCGCGCUGUGg-CCAc----UCGAC-GUGu -5'
28075 3' -58.5 NC_005887.1 + 30219 0.66 0.442102
Target:  5'- gGCGCGCGACGgCGGccugcucguccUGGcGCUucuGCGCGg -3'
miRNA:   3'- gUGCGCGCUGUgGCC-----------ACU-CGA---CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 30479 0.68 0.368175
Target:  5'- -gUGCGCGACGCgGcccGUGcGUUGCGCAc -3'
miRNA:   3'- guGCGCGCUGUGgC---CACuCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 31785 0.79 0.056376
Target:  5'- uGCGCugucccguuuGCGGCGCCGGcguUGAGCUGCAUAg -3'
miRNA:   3'- gUGCG----------CGCUGUGGCC---ACUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 32741 0.66 0.461861
Target:  5'- --aGCGCGGCGCuCGcGUGcGCgccgGCGCGc -3'
miRNA:   3'- gugCGCGCUGUG-GC-CACuCGa---CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 34244 0.67 0.376941
Target:  5'- gGCGCcuCGGCgaGCgCGGcGAGCUGCGCGc -3'
miRNA:   3'- gUGCGc-GCUG--UG-GCCaCUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 35258 0.72 0.18187
Target:  5'- cCACGCGCGauuccguguucaggaGCGCguCGGUGcGCUGCACc -3'
miRNA:   3'- -GUGCGCGC---------------UGUG--GCCACuCGACGUGu -5'
28075 3' -58.5 NC_005887.1 + 35334 0.68 0.368175
Target:  5'- gCGCGcCGCGGCgGCCGGccacGAGCUuCACGc -3'
miRNA:   3'- -GUGC-GCGCUG-UGGCCa---CUCGAcGUGU- -5'
28075 3' -58.5 NC_005887.1 + 36278 0.68 0.368174
Target:  5'- aGCGCGCGcaucuuCGuuGGUGAGUgccGCGCc -3'
miRNA:   3'- gUGCGCGCu-----GUggCCACUCGa--CGUGu -5'
28075 3' -58.5 NC_005887.1 + 36924 0.69 0.310805
Target:  5'- gGCGCGUGgucGCGCCGGUc-GCUGCGg- -3'
miRNA:   3'- gUGCGCGC---UGUGGCCAcuCGACGUgu -5'
28075 3' -58.5 NC_005887.1 + 36980 0.68 0.342725
Target:  5'- uCGCGCGgGucgagcuCGCCGGcGAGCacGCGCAg -3'
miRNA:   3'- -GUGCGCgCu------GUGGCCaCUCGa-CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 37694 0.68 0.334528
Target:  5'- gCAUGCaaGCGACGCCGG-GGGCgaucagguucaGCGCGu -3'
miRNA:   3'- -GUGCG--CGCUGUGGCCaCUCGa----------CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 38077 0.68 0.342725
Target:  5'- uCGCGCGCGAuCAUCGGgccGAGCaGUuCAg -3'
miRNA:   3'- -GUGCGCGCU-GUGGCCa--CUCGaCGuGU- -5'
28075 3' -58.5 NC_005887.1 + 40053 0.66 0.436268
Target:  5'- cUACGCcCGAUACCGuuccgaucguccggcGgggcgGGGCUGCACAu -3'
miRNA:   3'- -GUGCGcGCUGUGGC---------------Ca----CUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 40151 0.76 0.094742
Target:  5'- gCGCGcCGCGcuCGCCGcguGUGAGCUGCGCGa -3'
miRNA:   3'- -GUGC-GCGCu-GUGGC---CACUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 40924 0.66 0.461861
Target:  5'- cCGCGCGCG-CACCGaGUucggcaacgccGAGC-GCAUg -3'
miRNA:   3'- -GUGCGCGCuGUGGC-CA-----------CUCGaCGUGu -5'
28075 3' -58.5 NC_005887.1 + 41357 0.68 0.359549
Target:  5'- -cCGCGCGcCGCCGG-GAaGCUGUucgaGCAg -3'
miRNA:   3'- guGCGCGCuGUGGCCaCU-CGACG----UGU- -5'
28075 3' -58.5 NC_005887.1 + 41672 0.66 0.461861
Target:  5'- gUugGCGagccgGACGaaGGUagcGAGCUGCGCGa -3'
miRNA:   3'- -GugCGCg----CUGUggCCA---CUCGACGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.