miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28075 3' -58.5 NC_005887.1 + 16477 0.71 0.22283
Target:  5'- -cCGCGCGGCAggauCCGGcGGGCUGguCGg -3'
miRNA:   3'- guGCGCGCUGU----GGCCaCUCGACguGU- -5'
28075 3' -58.5 NC_005887.1 + 29657 0.69 0.288384
Target:  5'- uCACGCGCGGCGCgaGGUagcacAGCUGgCGCu -3'
miRNA:   3'- -GUGCGCGCUGUGg-CCAc----UCGAC-GUGu -5'
28075 3' -58.5 NC_005887.1 + 23238 0.68 0.334528
Target:  5'- gCACGCgaGCGGCGgCGGUcGGC-GCGCAa -3'
miRNA:   3'- -GUGCG--CGCUGUgGCCAcUCGaCGUGU- -5'
28075 3' -58.5 NC_005887.1 + 37694 0.68 0.334528
Target:  5'- gCAUGCaaGCGACGCCGG-GGGCgaucagguucaGCGCGu -3'
miRNA:   3'- -GUGCG--CGCUGUGGCCaCUCGa----------CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 36980 0.68 0.342725
Target:  5'- uCGCGCGgGucgagcuCGCCGGcGAGCacGCGCAg -3'
miRNA:   3'- -GUGCGCgCu------GUGGCCaCUCGa-CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 35334 0.68 0.368175
Target:  5'- gCGCGcCGCGGCgGCCGGccacGAGCUuCACGc -3'
miRNA:   3'- -GUGC-GCGCUG-UGGCCa---CUCGAcGUGU- -5'
28075 3' -58.5 NC_005887.1 + 30479 0.68 0.368175
Target:  5'- -gUGCGCGACGCgGcccGUGcGUUGCGCAc -3'
miRNA:   3'- guGCGCGCUGUGgC---CACuCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 12706 0.68 0.368175
Target:  5'- uCACGCGCGcACGCUGGUcGcGCaGCAgCAg -3'
miRNA:   3'- -GUGCGCGC-UGUGGCCA-CuCGaCGU-GU- -5'
28075 3' -58.5 NC_005887.1 + 41357 0.68 0.359549
Target:  5'- -cCGCGCGcCGCCGG-GAaGCUGUucgaGCAg -3'
miRNA:   3'- guGCGCGCuGUGGCCaCU-CGACG----UGU- -5'
28075 3' -58.5 NC_005887.1 + 13170 0.68 0.359549
Target:  5'- gCGCGCGCaGACAgCGG-GAGCgGUcgaGCAg -3'
miRNA:   3'- -GUGCGCG-CUGUgGCCaCUCGaCG---UGU- -5'
28075 3' -58.5 NC_005887.1 + 11607 0.68 0.359549
Target:  5'- gGCGCuCGACACgcaGGUgcaGAGCgUGCGCAa -3'
miRNA:   3'- gUGCGcGCUGUGg--CCA---CUCG-ACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 36278 0.68 0.368174
Target:  5'- aGCGCGCGcaucuuCGuuGGUGAGUgccGCGCc -3'
miRNA:   3'- gUGCGCGCu-----GUggCCACUCGa--CGUGu -5'
28075 3' -58.5 NC_005887.1 + 34244 0.67 0.376941
Target:  5'- gGCGCcuCGGCgaGCgCGGcGAGCUGCGCGc -3'
miRNA:   3'- gUGCGc-GCUG--UG-GCCaCUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 25070 0.67 0.376941
Target:  5'- gCGCGCGCGGCGCCGcccGAcgucucGCccgGCACGa -3'
miRNA:   3'- -GUGCGCGCUGUGGCca-CU------CGa--CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 16697 0.67 0.404072
Target:  5'- aCGCGCuGCGGCuggCGGUGAaGCucaaccUGCACAu -3'
miRNA:   3'- -GUGCG-CGCUGug-GCCACU-CG------ACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 24380 0.66 0.432403
Target:  5'- --gGUGCGGCcgauGCCGGcGAGCccGCGCAu -3'
miRNA:   3'- gugCGCGCUG----UGGCCaCUCGa-CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 11056 0.66 0.442102
Target:  5'- uGCGC-CGAUGCCGGUcGAGCUcgACGa -3'
miRNA:   3'- gUGCGcGCUGUGGCCA-CUCGAcgUGU- -5'
28075 3' -58.5 NC_005887.1 + 9652 0.66 0.442102
Target:  5'- -cCGCGCGGCuauCC-GUGcGCUGUACGc -3'
miRNA:   3'- guGCGCGCUGu--GGcCACuCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 30219 0.66 0.442102
Target:  5'- gGCGCGCGACGgCGGccugcucguccUGGcGCUucuGCGCGg -3'
miRNA:   3'- gUGCGCGCUGUgGCC-----------ACU-CGA---CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 9693 1.07 0.000425
Target:  5'- gCACGCGCGACACCGGUGAGCUGCACAc -3'
miRNA:   3'- -GUGCGCGCUGUGGCCACUCGACGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.