miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28075 3' -58.5 NC_005887.1 + 4148 0.75 0.113599
Target:  5'- uGCGCGCGACuggcucggguauugaGCCGGccauGCUGCACAc -3'
miRNA:   3'- gUGCGCGCUG---------------UGGCCacu-CGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 1494 0.77 0.082112
Target:  5'- aCGCGCGCGGCggcuucGCCGGUGGauccGaCUGCACGa -3'
miRNA:   3'- -GUGCGCGCUG------UGGCCACU----C-GACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 31785 0.79 0.056376
Target:  5'- uGCGCugucccguuuGCGGCGCCGGcguUGAGCUGCAUAg -3'
miRNA:   3'- gUGCG----------CGCUGUGGCC---ACUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 9693 1.07 0.000425
Target:  5'- gCACGCGCGACACCGGUGAGCUGCACAc -3'
miRNA:   3'- -GUGCGCGCUGUGGCCACUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 9795 0.69 0.318568
Target:  5'- aCugGCGCGAgaACgCGGUGAaaGCcugGCACAc -3'
miRNA:   3'- -GugCGCGCUg-UG-GCCACU--CGa--CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 19072 0.68 0.342725
Target:  5'- gGCGCG-GGCugCGGcaaccgccacGAGCUGCGCc -3'
miRNA:   3'- gUGCGCgCUGugGCCa---------CUCGACGUGu -5'
28075 3' -58.5 NC_005887.1 + 38077 0.68 0.342725
Target:  5'- uCGCGCGCGAuCAUCGGgccGAGCaGUuCAg -3'
miRNA:   3'- -GUGCGCGCU-GUGGCCa--CUCGaCGuGU- -5'
28075 3' -58.5 NC_005887.1 + 30219 0.66 0.442102
Target:  5'- gGCGCGCGACGgCGGccugcucguccUGGcGCUucuGCGCGg -3'
miRNA:   3'- gUGCGCGCUGUgGCC-----------ACU-CGA---CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 9652 0.66 0.442102
Target:  5'- -cCGCGCGGCuauCC-GUGcGCUGUACGc -3'
miRNA:   3'- guGCGCGCUGu--GGcCACuCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 11056 0.66 0.442102
Target:  5'- uGCGC-CGAUGCCGGUcGAGCUcgACGa -3'
miRNA:   3'- gUGCGcGCUGUGGCCA-CUCGAcgUGU- -5'
28075 3' -58.5 NC_005887.1 + 24380 0.66 0.432403
Target:  5'- --gGUGCGGCcgauGCCGGcGAGCccGCGCAu -3'
miRNA:   3'- gugCGCGCUG----UGGCCaCUCGa-CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 16697 0.67 0.404072
Target:  5'- aCGCGCuGCGGCuggCGGUGAaGCucaaccUGCACAu -3'
miRNA:   3'- -GUGCG-CGCUGug-GCCACU-CG------ACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 25070 0.67 0.376941
Target:  5'- gCGCGCGCGGCGCCGcccGAcgucucGCccgGCACGa -3'
miRNA:   3'- -GUGCGCGCUGUGGCca-CU------CGa--CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 34244 0.67 0.376941
Target:  5'- gGCGCcuCGGCgaGCgCGGcGAGCUGCGCGc -3'
miRNA:   3'- gUGCGc-GCUG--UG-GCCaCUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 36278 0.68 0.368174
Target:  5'- aGCGCGCGcaucuuCGuuGGUGAGUgccGCGCc -3'
miRNA:   3'- gUGCGCGCu-----GUggCCACUCGa--CGUGu -5'
28075 3' -58.5 NC_005887.1 + 6319 0.68 0.368174
Target:  5'- uGCGCcucgcCGGCGCCgaGGUGAcGCUGCugGu -3'
miRNA:   3'- gUGCGc----GCUGUGG--CCACU-CGACGugU- -5'
28075 3' -58.5 NC_005887.1 + 6962 0.68 0.359549
Target:  5'- gCGCGgGCG-CAUCGaGcaUGAGCUGUGCAg -3'
miRNA:   3'- -GUGCgCGCuGUGGC-C--ACUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 26199 0.68 0.359549
Target:  5'- uCGCGCacucgGCG-CGCCGGUGguuggcgggguGGUUGCGCGc -3'
miRNA:   3'- -GUGCG-----CGCuGUGGCCAC-----------UCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 11193 0.68 0.359549
Target:  5'- --gGCGCGACACgaUGGUGcaGGCguaUGCGCAc -3'
miRNA:   3'- gugCGCGCUGUG--GCCAC--UCG---ACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 29306 0.66 0.458867
Target:  5'- gUACGCgGCGACGCUGGccguguggaucugcUcGAGCUGCuuCAc -3'
miRNA:   3'- -GUGCG-CGCUGUGGCC--------------A-CUCGACGu-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.