miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28075 3' -58.5 NC_005887.1 + 31785 0.79 0.056376
Target:  5'- uGCGCugucccguuuGCGGCGCCGGcguUGAGCUGCAUAg -3'
miRNA:   3'- gUGCG----------CGCUGUGGCC---ACUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 5361 0.7 0.247393
Target:  5'- uGCGCGUGcuCGCCGGcGAGCUcgacccGCGCGa -3'
miRNA:   3'- gUGCGCGCu-GUGGCCaCUCGA------CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 11193 0.68 0.359549
Target:  5'- --gGCGCGACACgaUGGUGcaGGCguaUGCGCAc -3'
miRNA:   3'- gugCGCGCUGUG--GCCAC--UCG---ACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 35258 0.72 0.18187
Target:  5'- cCACGCGCGauuccguguucaggaGCGCguCGGUGcGCUGCACc -3'
miRNA:   3'- -GUGCGCGC---------------UGUG--GCCACuCGACGUGu -5'
28075 3' -58.5 NC_005887.1 + 9693 1.07 0.000425
Target:  5'- gCACGCGCGACACCGGUGAGCUGCACAc -3'
miRNA:   3'- -GUGCGCGCUGUGGCCACUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 1494 0.77 0.082112
Target:  5'- aCGCGCGCGGCggcuucGCCGGUGGauccGaCUGCACGa -3'
miRNA:   3'- -GUGCGCGCUG------UGGCCACU----C-GACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 26199 0.68 0.359549
Target:  5'- uCGCGCacucgGCG-CGCCGGUGguuggcgggguGGUUGCGCGc -3'
miRNA:   3'- -GUGCG-----CGCuGUGGCCAC-----------UCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 6962 0.68 0.359549
Target:  5'- gCGCGgGCG-CAUCGaGcaUGAGCUGUGCAg -3'
miRNA:   3'- -GUGCgCGCuGUGGC-C--ACUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 1985 0.71 0.234842
Target:  5'- uCGCGCGCGACGgCGGcacGGCcGCGCu -3'
miRNA:   3'- -GUGCGCGCUGUgGCCac-UCGaCGUGu -5'
28075 3' -58.5 NC_005887.1 + 37694 0.68 0.334528
Target:  5'- gCAUGCaaGCGACGCCGG-GGGCgaucagguucaGCGCGu -3'
miRNA:   3'- -GUGCG--CGCUGUGGCCaCUCGa----------CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 40924 0.66 0.461861
Target:  5'- cCGCGCGCG-CACCGaGUucggcaacgccGAGC-GCAUg -3'
miRNA:   3'- -GUGCGCGCuGUGGC-CA-----------CUCGaCGUGu -5'
28075 3' -58.5 NC_005887.1 + 16531 0.67 0.374297
Target:  5'- -cCGC-CGGCGCCGaGUGGGCgcgucagcaacucgUGCACGa -3'
miRNA:   3'- guGCGcGCUGUGGC-CACUCG--------------ACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 35334 0.68 0.368175
Target:  5'- gCGCGcCGCGGCgGCCGGccacGAGCUuCACGc -3'
miRNA:   3'- -GUGC-GCGCUG-UGGCCa---CUCGAcGUGU- -5'
28075 3' -58.5 NC_005887.1 + 30479 0.68 0.368175
Target:  5'- -gUGCGCGACGCgGcccGUGcGUUGCGCAc -3'
miRNA:   3'- guGCGCGCUGUGgC---CACuCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 40053 0.66 0.436268
Target:  5'- cUACGCcCGAUACCGuuccgaucguccggcGgggcgGGGCUGCACAu -3'
miRNA:   3'- -GUGCGcGCUGUGGC---------------Ca----CUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 416 0.66 0.442102
Target:  5'- gACGCGCcGCGCCGcccgcUGuuGCUGCGCu -3'
miRNA:   3'- gUGCGCGcUGUGGCc----ACu-CGACGUGu -5'
28075 3' -58.5 NC_005887.1 + 22659 0.66 0.451922
Target:  5'- gGCGCGCauuGAUauugcaucgGCCGGUGGGC-GCAa- -3'
miRNA:   3'- gUGCGCG---CUG---------UGGCCACUCGaCGUgu -5'
28075 3' -58.5 NC_005887.1 + 2914 0.66 0.461861
Target:  5'- -cCGCGaaCGACGCCGccgccaAGCUGCGCAa -3'
miRNA:   3'- guGCGC--GCUGUGGCcac---UCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 32741 0.66 0.461861
Target:  5'- --aGCGCGGCGCuCGcGUGcGCgccgGCGCGc -3'
miRNA:   3'- gugCGCGCUGUG-GC-CACuCGa---CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 41672 0.66 0.461861
Target:  5'- gUugGCGagccgGACGaaGGUagcGAGCUGCGCGa -3'
miRNA:   3'- -GugCGCg----CUGUggCCA---CUCGACGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.