Results 41 - 60 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 29657 | 0.69 | 0.288384 |
Target: 5'- uCACGCGCGGCGCgaGGUagcacAGCUGgCGCu -3' miRNA: 3'- -GUGCGCGCUGUGg-CCAc----UCGAC-GUGu -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 16477 | 0.71 | 0.22283 |
Target: 5'- -cCGCGCGGCAggauCCGGcGGGCUGguCGg -3' miRNA: 3'- guGCGCGCUGU----GGCCaCUCGACguGU- -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 4621 | 0.75 | 0.125697 |
Target: 5'- uCGC-CGCGGCGCCGGUGGccGCcgGCGCGa -3' miRNA: 3'- -GUGcGCGCUGUGGCCACU--CGa-CGUGU- -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 17295 | 0.75 | 0.109195 |
Target: 5'- cCGCGCGCGcaaACGCCGGUucggcgcaccgcGuGCUGCACu -3' miRNA: 3'- -GUGCGCGC---UGUGGCCA------------CuCGACGUGu -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 16531 | 0.67 | 0.374297 |
Target: 5'- -cCGC-CGGCGCCGaGUGGGCgcgucagcaacucgUGCACGa -3' miRNA: 3'- guGCGcGCUGUGGC-CACUCG--------------ACGUGU- -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 5396 | 0.67 | 0.376941 |
Target: 5'- --aGCGCGACcggugaACCGGcGGGCgGCGCc -3' miRNA: 3'- gugCGCGCUG------UGGCCaCUCGaCGUGu -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 15695 | 0.67 | 0.383161 |
Target: 5'- -cCGCGCGGCcggaugauuccgccGCCGGcgugaagGAGCUGaCGCGc -3' miRNA: 3'- guGCGCGCUG--------------UGGCCa------CUCGAC-GUGU- -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 40924 | 0.66 | 0.461861 |
Target: 5'- cCGCGCGCG-CACCGaGUucggcaacgccGAGC-GCAUg -3' miRNA: 3'- -GUGCGCGCuGUGGC-CA-----------CUCGaCGUGu -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 41672 | 0.66 | 0.461861 |
Target: 5'- gUugGCGagccgGACGaaGGUagcGAGCUGCGCGa -3' miRNA: 3'- -GugCGCg----CUGUggCCA---CUCGACGUGU- -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 32741 | 0.66 | 0.461861 |
Target: 5'- --aGCGCGGCGCuCGcGUGcGCgccgGCGCGc -3' miRNA: 3'- gugCGCGCUGUG-GC-CACuCGa---CGUGU- -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 2914 | 0.66 | 0.461861 |
Target: 5'- -cCGCGaaCGACGCCGccgccaAGCUGCGCAa -3' miRNA: 3'- guGCGC--GCUGUGGCcac---UCGACGUGU- -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 22659 | 0.66 | 0.451922 |
Target: 5'- gGCGCGCauuGAUauugcaucgGCCGGUGGGC-GCAa- -3' miRNA: 3'- gUGCGCG---CUG---------UGGCCACUCGaCGUgu -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 416 | 0.66 | 0.442102 |
Target: 5'- gACGCGCcGCGCCGcccgcUGuuGCUGCGCu -3' miRNA: 3'- gUGCGCGcUGUGGCc----ACu-CGACGUGu -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 7596 | 0.67 | 0.42283 |
Target: 5'- uCGCGUaaGCGGCGCCGGUugaucgauGGGCgGCGa- -3' miRNA: 3'- -GUGCG--CGCUGUGGCCA--------CUCGaCGUgu -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 321 | 0.67 | 0.42283 |
Target: 5'- uGCGCGCGuACACCGaG-GAagUGCGCGa -3' miRNA: 3'- gUGCGCGC-UGUGGC-CaCUcgACGUGU- -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 18535 | 0.67 | 0.42283 |
Target: 5'- aCACGgGCGuucUCGGUGGGCggcgGCGCc -3' miRNA: 3'- -GUGCgCGCuguGGCCACUCGa---CGUGu -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 27540 | 0.67 | 0.42188 |
Target: 5'- uCAUGgGCGGCGCUccaucauGGUGuGCaGCACGc -3' miRNA: 3'- -GUGCgCGCUGUGG-------CCACuCGaCGUGU- -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 12601 | 0.67 | 0.413386 |
Target: 5'- gGC-CGCGACGCuCGGcGuGCUGaCGCAg -3' miRNA: 3'- gUGcGCGCUGUG-GCCaCuCGAC-GUGU- -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 2700 | 0.67 | 0.413386 |
Target: 5'- gUACGgGCGGCAagCGGccGAGCcGCGCGa -3' miRNA: 3'- -GUGCgCGCUGUg-GCCa-CUCGaCGUGU- -5' |
|||||||
28075 | 3' | -58.5 | NC_005887.1 | + | 40151 | 0.76 | 0.094742 |
Target: 5'- gCGCGcCGCGcuCGCCGcguGUGAGCUGCGCGa -3' miRNA: 3'- -GUGC-GCGCu-GUGGC---CACUCGACGUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home