miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28075 3' -58.5 NC_005887.1 + 15695 0.67 0.383161
Target:  5'- -cCGCGCGGCcggaugauuccgccGCCGGcgugaagGAGCUGaCGCGc -3'
miRNA:   3'- guGCGCGCUG--------------UGGCCa------CUCGAC-GUGU- -5'
28075 3' -58.5 NC_005887.1 + 5396 0.67 0.376941
Target:  5'- --aGCGCGACcggugaACCGGcGGGCgGCGCc -3'
miRNA:   3'- gugCGCGCUG------UGGCCaCUCGaCGUGu -5'
28075 3' -58.5 NC_005887.1 + 34244 0.67 0.376941
Target:  5'- gGCGCcuCGGCgaGCgCGGcGAGCUGCGCGc -3'
miRNA:   3'- gUGCGc-GCUG--UG-GCCaCUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 25070 0.67 0.376941
Target:  5'- gCGCGCGCGGCGCCGcccGAcgucucGCccgGCACGa -3'
miRNA:   3'- -GUGCGCGCUGUGGCca-CU------CGa--CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 16531 0.67 0.374297
Target:  5'- -cCGC-CGGCGCCGaGUGGGCgcgucagcaacucgUGCACGa -3'
miRNA:   3'- guGCGcGCUGUGGC-CACUCG--------------ACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 35334 0.68 0.368175
Target:  5'- gCGCGcCGCGGCgGCCGGccacGAGCUuCACGc -3'
miRNA:   3'- -GUGC-GCGCUG-UGGCCa---CUCGAcGUGU- -5'
28075 3' -58.5 NC_005887.1 + 12706 0.68 0.368175
Target:  5'- uCACGCGCGcACGCUGGUcGcGCaGCAgCAg -3'
miRNA:   3'- -GUGCGCGC-UGUGGCCA-CuCGaCGU-GU- -5'
28075 3' -58.5 NC_005887.1 + 30479 0.68 0.368175
Target:  5'- -gUGCGCGACGCgGcccGUGcGUUGCGCAc -3'
miRNA:   3'- guGCGCGCUGUGgC---CACuCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 36278 0.68 0.368174
Target:  5'- aGCGCGCGcaucuuCGuuGGUGAGUgccGCGCc -3'
miRNA:   3'- gUGCGCGCu-----GUggCCACUCGa--CGUGu -5'
28075 3' -58.5 NC_005887.1 + 6319 0.68 0.368174
Target:  5'- uGCGCcucgcCGGCGCCgaGGUGAcGCUGCugGu -3'
miRNA:   3'- gUGCGc----GCUGUGG--CCACU-CGACGugU- -5'
28075 3' -58.5 NC_005887.1 + 41357 0.68 0.359549
Target:  5'- -cCGCGCGcCGCCGG-GAaGCUGUucgaGCAg -3'
miRNA:   3'- guGCGCGCuGUGGCCaCU-CGACG----UGU- -5'
28075 3' -58.5 NC_005887.1 + 13170 0.68 0.359549
Target:  5'- gCGCGCGCaGACAgCGG-GAGCgGUcgaGCAg -3'
miRNA:   3'- -GUGCGCG-CUGUgGCCaCUCGaCG---UGU- -5'
28075 3' -58.5 NC_005887.1 + 11607 0.68 0.359549
Target:  5'- gGCGCuCGACACgcaGGUgcaGAGCgUGCGCAa -3'
miRNA:   3'- gUGCGcGCUGUGg--CCA---CUCG-ACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 11193 0.68 0.359549
Target:  5'- --gGCGCGACACgaUGGUGcaGGCguaUGCGCAc -3'
miRNA:   3'- gugCGCGCUGUG--GCCAC--UCG---ACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 26199 0.68 0.359549
Target:  5'- uCGCGCacucgGCG-CGCCGGUGguuggcgggguGGUUGCGCGc -3'
miRNA:   3'- -GUGCG-----CGCuGUGGCCAC-----------UCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 6962 0.68 0.359549
Target:  5'- gCGCGgGCG-CAUCGaGcaUGAGCUGUGCAg -3'
miRNA:   3'- -GUGCgCGCuGUGGC-C--ACUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 36980 0.68 0.342725
Target:  5'- uCGCGCGgGucgagcuCGCCGGcGAGCacGCGCAg -3'
miRNA:   3'- -GUGCGCgCu------GUGGCCaCUCGa-CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 38077 0.68 0.342725
Target:  5'- uCGCGCGCGAuCAUCGGgccGAGCaGUuCAg -3'
miRNA:   3'- -GUGCGCGCU-GUGGCCa--CUCGaCGuGU- -5'
28075 3' -58.5 NC_005887.1 + 19072 0.68 0.342725
Target:  5'- gGCGCG-GGCugCGGcaaccgccacGAGCUGCGCc -3'
miRNA:   3'- gUGCGCgCUGugGCCa---------CUCGACGUGu -5'
28075 3' -58.5 NC_005887.1 + 37694 0.68 0.334528
Target:  5'- gCAUGCaaGCGACGCCGG-GGGCgaucagguucaGCGCGu -3'
miRNA:   3'- -GUGCG--CGCUGUGGCCaCUCGa----------CGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.