Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28075 | 5' | -58.6 | NC_005887.1 | + | 9730 | 1.05 | 0.000574 |
Target: 5'- cAUCGUGCCGCUCGACGGGAAGCUCGUg -3' miRNA: 3'- -UAGCACGGCGAGCUGCCCUUCGAGCA- -5' |
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28075 | 5' | -58.6 | NC_005887.1 | + | 40288 | 0.69 | 0.281198 |
Target: 5'- aGUCgGUGCCGCUCGAuuCGuucGAGCUCGa -3' miRNA: 3'- -UAG-CACGGCGAGCU--GCcc-UUCGAGCa -5' |
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28075 | 5' | -58.6 | NC_005887.1 | + | 16394 | 0.69 | 0.281198 |
Target: 5'- aGUCGagacgGCCGC-CGGCcGGAAGCUCa- -3' miRNA: 3'- -UAGCa----CGGCGaGCUGcCCUUCGAGca -5' |
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28075 | 5' | -58.6 | NC_005887.1 | + | 40369 | 0.69 | 0.303187 |
Target: 5'- -cCGUGCCGCUCGucGCGcGcGAGGaaaUCGUg -3' miRNA: 3'- uaGCACGGCGAGC--UGC-C-CUUCg--AGCA- -5' |
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28075 | 5' | -58.6 | NC_005887.1 | + | 34850 | 0.69 | 0.303187 |
Target: 5'- gGUCGUGCCGC-CGA-GGGuguAGUUCa- -3' miRNA: 3'- -UAGCACGGCGaGCUgCCCu--UCGAGca -5' |
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28075 | 5' | -58.6 | NC_005887.1 | + | 11785 | 0.67 | 0.394892 |
Target: 5'- -gCGUccucGCUGCUCGGCGGcGucGGUUCGUa -3' miRNA: 3'- uaGCA----CGGCGAGCUGCC-Cu-UCGAGCA- -5' |
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28075 | 5' | -58.6 | NC_005887.1 | + | 41867 | 0.66 | 0.42283 |
Target: 5'- cUCGUGCCGUUCGAgcGGAAuuUCGa -3' miRNA: 3'- uAGCACGGCGAGCUgcCCUUcgAGCa -5' |
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28075 | 5' | -58.6 | NC_005887.1 | + | 26669 | 0.66 | 0.451922 |
Target: 5'- -cCG-GCCGCgCGGCGGuGAgcuggucgAGCUCGg -3' miRNA: 3'- uaGCaCGGCGaGCUGCC-CU--------UCGAGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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