Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28077 | 3' | -60.2 | NC_005887.1 | + | 13086 | 0.72 | 0.142763 |
|
Target: 5'- cGCGGCGcucgaucGCGGAGUGCUGcagGGCgUGCc -3' miRNA: 3'- aUGCCGC-------UGCCUCGCGACag-CCG-ACG- -5' |
|||||||
| 28077 | 3' | -60.2 | NC_005887.1 | + | 38719 | 0.73 | 0.135133 |
|
Target: 5'- gACGGCGACaGGuuuucacggccgaAGCGCUGcgCGGCcugGCg -3' miRNA: 3'- aUGCCGCUG-CC-------------UCGCGACa-GCCGa--CG- -5' |
|||||||
| 28077 | 3' | -60.2 | NC_005887.1 | + | 10099 | 0.73 | 0.124389 |
|
Target: 5'- gGCGGCccgcgccGACGGccaGCUGaUCGGCUGCa -3' miRNA: 3'- aUGCCG-------CUGCCucgCGAC-AGCCGACG- -5' |
|||||||
| 28077 | 3' | -60.2 | NC_005887.1 | + | 14219 | 0.74 | 0.108531 |
|
Target: 5'- cAgGGCGGCGccGCGCUGuUCGGCgcgGCa -3' miRNA: 3'- aUgCCGCUGCcuCGCGAC-AGCCGa--CG- -5' |
|||||||
| 28077 | 3' | -60.2 | NC_005887.1 | + | 32501 | 0.74 | 0.106725 |
|
Target: 5'- gUGCGGCGcGCGGcguucagguuggccGCGCUGacCGGCUGCg -3' miRNA: 3'- -AUGCCGC-UGCCu-------------CGCGACa-GCCGACG- -5' |
|||||||
| 28077 | 3' | -60.2 | NC_005887.1 | + | 17172 | 0.75 | 0.094319 |
|
Target: 5'- --aGGCGugGGAGCGCgcgaacgCGGCcGCa -3' miRNA: 3'- augCCGCugCCUCGCGaca----GCCGaCG- -5' |
|||||||
| 28077 | 3' | -60.2 | NC_005887.1 | + | 30956 | 0.75 | 0.086656 |
|
Target: 5'- gGCGGCGcCGGccgccAGCGCUc-CGGCUGCg -3' miRNA: 3'- aUGCCGCuGCC-----UCGCGAcaGCCGACG- -5' |
|||||||
| 28077 | 3' | -60.2 | NC_005887.1 | + | 21273 | 0.75 | 0.086656 |
|
Target: 5'- cGCGGCGGCGGcguauGCGCUGcUGGCgucGCc -3' miRNA: 3'- aUGCCGCUGCCu----CGCGACaGCCGa--CG- -5' |
|||||||
| 28077 | 3' | -60.2 | NC_005887.1 | + | 8473 | 1.08 | 0.000242 |
|
Target: 5'- aUACGGCGACGGAGCGCUGUCGGCUGCc -3' miRNA: 3'- -AUGCCGCUGCCUCGCGACAGCCGACG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home